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中国科学院昆明植物研究所知识管理系统
Knowledge Management System of Kunming Institute of Botany,CAS
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焦丽娟 [1]
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GST, P < 0.05) were exhibited by this species. The SAMOVA revealed seven diverging groups of related chlorotypes, six of them had distinct nonoverlapping geographical ranges: one in the northeast comprising 10 populations, a second with a southeast distribution comprising 22 populations, and the remaning four groups comprising 15 populations located in the west part of the species’ range along different river valleys. The genetic clustering of populations into three regions was also supported by analysis of molecular variance, which showed that most genetic variation (82.43%) was found among these three regions. Two clusters were distinguished by both phylogenetic analysis and genealogical analysis of chlorotypes, one consisting of chlorotypes from the western region and the second consisting of those from the eastern region. Significant genetic differences between the two regions might be attributed to vicariance and restricted gene flow, and this vicariance could be explained by the physical environmental heterogeneity on each side of the Tanaka-Kaiyong Line. Following the uplift of the Tibetan Plateau, the reorganization of the major river drainages was primarily caused by river separation and capture events. These historical events could change the distribution of S. davidii from fragmented to continuous (Upper/Lower Jinshajiang and Yalongjiang/Daduhe), and from continuous to fragmented (Nujiang and Jinshajiang/Honghe). However, spatial and temporal patterns of phylogeographic divergence are strongly associated with historical disjunction rather than modern drainage connections. Moreover, the following north-south split in the eastern region and effective isolation with their genetic diversity were essentially modelled by genetic drift. The higher chlorotype richness and genetic divergence for populations in western region compared with other two regions suggests that there were multipe refugia or in situ survival of S. davidii in the Himalayan-Hengduan Mountain region. Fixation of chlorotypes in the northeastern region and near fixation in the southeastern region suggest a recent colonization of these areas. We further found that this species underwent past range expansion around 37-303 thousand years ago (kya). The southeastern populations likely experienced a demographic expansion via unidirectional gene flow along rivers, while northeastern populations underwent a more northward expansion, both from initial populations (s) (21, 22, 23) preserved on eastern refugia (Jinshajiang). This process might have been accompanied with a series of founder effects or bottlenecks making populations genetically impoverished. 3. Phylogeographic analysisbased on nuclear sequence，We sequenced the nuclear (ncpGS) region in all populations sampled, recovering 23 nuclear haplotypes. Compared to cpDNA, both NST (0.470) and GST (0.338) were relatively lower, but NST was also significantly larger than GST. 37.10% of the total variation was distributed among regions which was much lower than that shown by chlorotypes. Thus, more extensive distribution of nuclear haplotypes was exhibited across the geographical range instead of the strong population subdivision observed in chlorotypes. Similarly to the chloroplast data, we found that genetic differentiation of nDNA was positively correlated with the geographical distance, but the increase in the geographical distance between populations did not increase the genetic differentiation of nDNA as rapidly as that of cpDNA. These contrasting levels between the chloroplast and nuclear genomes of S. davidii are likely due to limited gene flow of cpDNA by seeds vs. the extensive gene flow of nDNA by wind-mediated pollen in the population history. We also determined from nuclear markers that haplotype diversity was reduced in the southeastern and northeastern regions due to the loss of rare haplotypes in western region. This reduction of gene diversity is also a signature of founder events or recent bottleneck during post-glacial colonization. However, nuclear diversity within populations remains high. This provides evidence that regionally pollen flow might be sufficiently high to blur the genetic identity of founder populations over a reasonably large spatial scale.3. Relationships among three varieties，The phylogenetic analysis identified two phylogroups of chlorotypes, corresponding to S. davidii var. davidii and var. chuansinesis. The former was distinguished by the abscence of predonminant nuclear haplotype H1 of the latter. The monophyletic group of chlorotypes in var. davidii and var. liangshanesis showed their relatively close relationship. And their genetic divergence from the third variety appears to be relative to their slight morphological difference in leaf size and the divergent environmental niche spaces they occupy. Thus, the observed differences in morphological characters between var. chuansinesis and other two varieties can be explained by the seed dispersal limitation illustrated above (as inferred by geographical separation) and by environmental heterogeneity (as inferred by precipitation or elevation) or by a combination of both. After all, the geological changes, drainage reorganization, and floristic differences following the Himalayan uplift have been suggested to affect the genetic structure of S. davidii. These results provide new insights into the phylogeographic pattern of plants in China. In addition, the unique population genetic structure found in S. davidii has provided important insights into the evolutionary history of this species. The genetic profile uncovered in this study is also critical for its conservation management. Our study has uncovered the existence of at least two ‘evolutionary significant units’ independent units within S. davidii, corresponding to var. davidii from eastern region and var. chuansinensis from western region. The conservation efforts should first focus on most western populations and on the southeastern ones exhibiting high levels of genetic diversity, while the genetically homogeneous northeastern populations located in the degraded Loess Plateau should require much greater conservation 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Taxus wallichiana complex represents an old relict conifer lineage that survived through the Tertiary. It is currently distributed in the mountain forests in South and Southwest China south of the Qinling Mountains. In the present study, we explored phylogeography of the complex by using two chloroplast DNA regions, one nuclear ribosomal DNA spacer region and eight microsatellite (SSR) loci. The main conclusions can be summarized as follows:1. Phylogeographic pattern based on chloroplast haplotypes，There were 11 cpDNA haplotypes identified in the T. wallichiana complex The complex showed a high level of genetic diversity and obvious genetic differentiation. The 44 sampled populations showed obvious genetic structure, which could be divided into five groups, namely the Huanan group, the Daba group, the Emei group, the Yunnan group and the Qinling group. There was extremely high genetic differentiation among groups, but not significant within group. The divergence times of the five lineages, estimated using average mutation rates of trnL-trnF, fell in the Pliocene. 2. Phylogeographic patterns based on ITS sequences，These included 38 unique ‘haplotypes’ based on ITS data. Their analysis showed that the T. wallichiana complex possessed a high genetic diversity. These populations could be divided into four groups, namely the Huanan group, the Daba/Emei group, the Yunnan group and the Qinling group. Based on all results, it appears that the major lineages constituting the T. wallichiana complex have arisen before Quaternary glaciation cycles, and may have survived isolated in different refugia. During interglacial periods some lineages appear to have come in contact and hybridizedbut other lineages merged forming populations with mixed haplotypes without signs of hybridization. The present-day phylogeographical distribution pattern of the T. wallichiana complex might thus be the result of repeated expansion / contractions of populations during interglacial / glacial cycles.3. Population genetic analysis using microsatellite (SSR) markers，Eight SSR loci were used for population genetic analysis on the T. wallichiana complex. A lower level of genetic diversity at the population level and high genetic differentiation among population was detected. The results of structure analysis were similar to those on the ITS data, dividing the populations into four groups (lineages). According to the results here, it was deduced that each of the 4 lineages of the T. wallichiana complex may possessed respective glacial refugia, and some lineages (such as the Qinling and Huanan lineage) might have survived in multiple refugia in the Quaternay glaciations. The present distribution pattern of this complex was likely influenced by the uplift of the QTP and Quaternary glaciation.","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&fq=dc.type_filter%3A%E5%AD%A6%E4%BD%8D%E8%AE%BA%E6%96%87&sort_by=2&isNonaffiliated=false&search_type=-1&query1=%25E5%259F%25BA%25E5%259B%25A0%25E6%25B5%2581&order=desc&&fq=dc.project.title_filter%3AThe%5C+Taxus%5C+wallichiana%5C+complex%5C+represents%5C+an%5C+old%5C+relict%5C+conifer%5C+lineage%5C+that%5C+survived%5C+through%5C+the%5C+Tertiary.%5C+It%5C+is%5C+currently%5C+distributed%5C+in%5C+the%5C+mountain%5C+forests%5C+in%5C+South%5C+and%5C+Southwest%5C+China%5C+south%5C+of%5C+the%5C+Qinling%5C+Mountains.%C2%A0In%5C+the%5C+present%5C+study%2C%5C+we%5C+explored%5C+phylogeography%5C+of%5C+the%5C+complex%5C+by%5C+using%5C+two%5C+chloroplast%5C+DNA%5C+regions%2C%5C+one%5C+nuclear%5C+ribosomal%5C+DNA%5C+spacer%5C+region%5C+and%5C+eight%5C+microsatellite%5C+%5C%28SSR%5C%29%5C+loci.%5C+The%5C+main%5C+conclusions%5C+can%5C+be%5C+summarized%5C+as%5C+follows%5C%3A1.%5C+Phylogeographic%5C+pattern%5C+based%5C+on%5C+chloroplast%5C+haplotypes%EF%BC%8CThere%5C+were%5C+11%5C+cpDNA%5C+haplotypes%5C+identified%5C+in%5C+the%5C+T.%5C+wallichiana%5C+complex%5C+The%5C+complex%5C+showed%5C+a%5C+high%5C+level%5C+of%5C+genetic%5C+diversity%5C+and%5C+obvious%5C+genetic%5C+differentiation.%5C+The%5C+44%5C+sampled%5C+populations%5C+showed%5C+obvious%5C+genetic%5C+structure%2C%5C+which%5C+could%5C+be%5C+divided%5C+into%5C+five%5C+groups%2C%5C+namely%5C+the%5C+Huanan%5C+group%2C%5C+the%5C+Daba%5C+group%2C%5C+the%5C+Emei%5C+group%2C%5C+the%5C+Yunnan%5C+group%5C+and%5C+the%5C+Qinling%5C+group.%5C+There%5C+was%5C+extremely%5C+high%5C+genetic%5C+differentiation%5C+among%5C+groups%2C%5C+but%5C+not%5C+significant%5C+within%5C+group.%5C+The%5C+divergence%5C+times%5C+of%5C+the%5C+five%5C+lineages%2C%5C+estimated%5C+using%5C+average%5C+mutation%5C+rates%5C+of%5C+trnL%5C-trnF%2C%5C+fell%5C+in%5C+the%5C+Pliocene.%C2%A02.%5C+Phylogeographic%5C+patterns%5C+based%5C+on%5C+ITS%5C+sequences%EF%BC%8CThese%5C+included%5C+38%5C+unique%5C+%E2%80%98haplotypes%E2%80%99%5C+based%5C+on%5C+ITS%5C+data.%5C+Their%5C+analysis%5C+showed%5C+that%5C+the%5C+T.%5C+wallichiana%5C+complex%5C+possessed%5C+a%5C+high%5C+genetic%5C+diversity.%C2%A0These%5C+populations%5C+could%5C+be%5C+divided%5C+into%5C+four%5C+groups%2C%5C+namely%5C+the%5C+Huanan%5C+group%2C%5C+the%5C+Daba%5C%2FEmei%5C+group%2C%5C+the%5C+Yunnan%5C+group%5C+and%5C+the%5C+Qinling%5C+group.%5C+Based%5C+on%5C+all%5C+results%2C%5C+it%5C+appears%5C+that%5C+the%5C+major%5C+lineages%5C+constituting%5C+the%5C+T.%5C+wallichiana%5C+complex%5C+have%5C+arisen%5C+before%5C+Quaternary%5C+glaciation%5C+cycles%2C%5C+and%5C+may%5C+have%5C+survived%5C+isolated%5C+in%5C+different%5C+refugia.%5C+During%5C+interglacial%5C+periods%5C+some%5C+lineages%5C+appear%5C+to%5C+have%5C+come%5C+in%5C+contact%5C+and%5C+hybridizedbut%5C+other%5C+lineages%5C+merged%5C+forming%5C+populations%5C+with%5C+mixed%5C+haplotypes%5C+without%5C+signs%5C+of%5C+hybridization.%5C+The%5C+present%5C-day%5C+phylogeographical%5C+distribution%5C+pattern%5C+of%5C+the%5C+T.%5C+wallichiana%5C+complex%5C+might%5C+thus%5C+be%5C+the%5C+result%5C+of%5C+repeated%5C+expansion%5C+%5C%2F%5C+contractions%5C+of%5C+populations%5C+during%5C+interglacial%5C+%5C%2F%5C+glacial%5C+cycles.3.%5C+Population%5C+genetic%5C+analysis%5C+using%5C+microsatellite%5C+%5C%28SSR%5C%29%5C+markers%EF%BC%8CEight%5C+SSR%5C+loci%5C+were%5C+used%5C+for%5C+population%5C+genetic%5C+analysis%5C+on%5C+the%5C+T.%5C+wallichiana%5C+complex.%5C+A%5C+lower%5C+level%5C+of%5C+genetic%5C+diversity%5C+at%5C+the%5C+population%5C+level%5C+and%5C+high%5C+genetic%5C+differentiation%5C+among%5C+population%5C+was%5C+detected.%5C+The%5C+results%5C+of%5C+structure%5C+analysis%5C+were%5C+similar%5C+to%5C+those%5C+on%5C+the%5C+ITS%5C+data%2C%5C+dividing%5C+the%5C+populations%5C+into%5C+four%5C+groups%5C+%5C%28lineages%5C%29.%C2%A0According%5C+to%5C+the%5C+results%5C+here%2C%5C+it%5C+was%5C+deduced%5C+that%5C+each%5C+of%5C+the%5C+4%5C+lineages%5C+of%5C+the%5C+T.%5C+wallichiana%5C+complex%5C+may%5C+possessed%5C+respective%5C+glacial%5C+refugia%2C%5C+and%5C+some%5C+lineages%5C+%5C%28such%5C+as%5C+the%5C+Qinling%5C+and%5C+Huanan%5C+lineage%5C%29%5C+might%5C+have%5C+survived%5C+in%5C+multiple%5C+refugia%5C+in%5C+the%5C+Quaternay%5C+glaciations.%5C+The%5C+present%5C+distribution%5C+pattern%5C+of%5C+this%5C+complex%5C+was%5C+likely%5C+influenced%5C+by%5C+the%5C+uplift%5C+of%5C+the%5C+QTP%5C+and%5C+Quaternary%5C+glaciation."},{"jsname":"The origin center and diversity center of the genus Ligularia were considered to be central China and Hengduan Mountains Region (HMR) of China, respectively. In this research, we studied the phylogeographic pattern of L. hodgsonii and L. tongolensis, which was distributed in the origin center and diversity center, respectively. We aimed to infer the evolutionary process of Ligularia species. 1. The phylogeography of L. hodgsonii，Here, we investigated the phylogeographic history of L. hodgsonii disjunctively distributed in China and Japan. Two hundred and eighty individuals were collected from 29 natural populations, 23 located in China and 6 in Japan. A total of 19 haplotypes were identified with the combination of three chloroplast DNA (cpDNA) sequences variations (trnQ-5’rps16, trnL-rpl32 and psbA-trnH). At the species level, a high level of haplotype diversity (Hd) and total genetic diversity (HT) was detected. However, the average intrapopulation diversity (HS) was very low. Consequently, the population differentiation(NST = 0.989, GST = 0.933 ) was pronounced with a significant phylogeographic structure (NST > GST, p < 0.01). At the regional level, Chinese and Japanese L. hodgsonii had a similar estimate of genetic diversity (China: Hd = 0.847, HT = 0.869; Japan: Hd = 0.766, HT = 0.867). Populations from China and Japan possess unique sets of haplotypes, and no haplotypes were shared between the regions. Furthermore, both the phyloegenetic and network analyses recovered the haplotypes of China and Japan as two distinct clades. Thus, we suggested the disjunct distribution of L. hodgsonii in China and Japan may present the climatic vicariant relicts of the ancient widely distributed populations. After divergence, this species within each region experienced independent evolutionary process. In China, L. hodgsonii was distributed around the Sichuan Basin. This distribution range can be divided into five regions. They were Jiajin Mountain region, E’mei Mountain region, Yunnan-Guizhou Plateau region, Wushan-Wuling Mountain region and Qinling Mountain region. Twelve haplotypes were indentified within these regions. Each region had its own specific haplotypes, which had different ancestry in the network. We deduced that Chinese L. hodgsonii might survive the LGM in multiple isolated refugia around the Sichuan Basin. In Japan, L. hodgsonii was disjunctively distributed in northern Honshu and Hokkaido. Seven haplotypes were identified within this region. However, the genetic diversity in Honshu (Hd = 0.821) was much higher than that in Hokkaido (Hd = 0.513). And all haplotypes in Hokkaido were derived from Honshu. This haplotype distribution suggested that the northern Honshu could have served as refuge in Japan. Nested clade analysis (NCA) indicated multiple forces including the vicariance and long-distance dispersal affected the disjunctive distribution among populations of L. hodgsonii in Japan.2. The phylogeography of L. tongolensis，Ligularia tongolensis was distributed along the Jinshajiang watershed, Yalongjiang watershed and Wumeng Mountain. In order to deduce the demographic history of this species, we sequenced two chloroplast DNA (cpDNA) intergenic spacers (trnQ-5’rps16, trnL-rpl32) in 140 individuals from 14 populations of three groups (Jinshajiang vs. Yalongjiang vs. Wumeng) within this species range. High levels of haplotype diversity (Hd = 0.814) and total genetic diversity (HT = 0.862) were detected at the species level, based on a total oftwelve haplotypes identified. However, the intrapopulation diversity (HS = 0.349) was low, which led to the high levels of genetic divergence (GST = 0.595, NST = 0.614, FST = 0.597). In consideration of the speciation of L. tongolensis resulting from the uplifts of the Qinghai-Tibetan Plateau (QTP), we thought the present genetic structure of L. tongolensis was shaped by the fragmentation of ancestral populations during the courses of QTP uplifts. This was further supported by the absence of IBD tests (r = –0.291, p = 0.964), which suggest that the differentiation had not occurred in accordance with the isolation by distance model. The genetic differentiation in L. tongolensis appears to be associated with historical events. Meanwhile, H2 and H5, the dominant haplotypes that located on internal nodes and deviated from extinct ancestral haplotype in the network, were detected to be shared between Jinshajiang and Yalongjiang groups. We deduced that ancestral populations of this species might have had a continuous distribution range, which was then fragmented and isolated by the following tectonic events. Finally, the ancestral polymorphism, H2 and H5, were randomly allocated in Jinshajiang watershed and Yalongjiang watershed. Meanwhile, H5 was the dominant haplotype in Jinshajiang watershed; H7 was the domiant haplotype in Yalongjiang watershed and Wumeng Mountain. This haplotype distribution pattern indicated that each group might have served as a refuge for L. tongolensis during the Quaternary Glaciation. Postglacial demographic expansion was supported by unimodal mismatch distribution and star-like phylogenies, with expansion ages of 274 ka B. P. for this 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investigating sympatric distribution of Rhododendron irroratum, examing the variation of floral characters and sequencing the ITS and other chloroplast segements, we find that (1) R. irroratum might be of hybrid origin, with its maternal parent R. delavayi or R. decorum. (2) The ancestral haplotype of R. irroratum might be identical to that of R. decorum, and it is under ongoing introgression from R. delavayi. 1. The natural distribution, Seven distribution sites of R. irroratum in Guizhou and Yunnan province were investigated. The result shows that R. irroratum is sympatric with R. delavayi, R. decorum and R. agastum. R. delavayi is widespread across the above-mentioned seven sites, whereas R. agastum is scarce in DaPingDi, HuaDianBa and HeQing sites. R. irroratum and R. agastum distribute at the higher elevation compared to that of R. decorum, while R. delavayi is of widespread distribution across both regions of R. decorum and R. irroratum.2. Floral variation of R. irroratum among populations, The floral characters remain vary within and among populations except for the stamen number and the petal number. Seven floral characters correlates with each other among populations, of 28 different combinations, 26 reveal significant correlation, and 23 extremely significant correlation. The PCA analysis shows that the first two components account for 52.18% of the total variation. The dendrogram tree is divided into four main parts, roughly representing the respective populations, which is constructed using 22 R. irroratum individuals. 3. Putative Development and the transferability test of SSR makers, Fifteen microsatellite loci were developed and characterized in R. delavayi. The average allele number of these microsatellites was 4 per locus, ranging from 3 to 6. The ranges of expected (HE) and observed (HO) heterozygosities were 0.0365-0.7091 and 0.0263-0.9512, respectively. Seven loci (R-111, R-112, R-147, R-299, R-320, R-335, and R-544) deviated significantly from the HWE (P﹤0.01). No significant linkage disequilibrium was detected between locus pairs except for three locus pairs: R-299 and R-544, R-166 and R-320, R-111 and R-320. Cross-species amplification in R. agastum, R. decorum, and R. irroratum showed that a subset of these markers holds promise for congeneric species study.4. ITS, matK, trnH-psbA and rbcL sequences. R. delavayi has six sites different from that of R. decorum in its ITS region, whereas R. agastum reveals double peaks at the corresponding sites and R. irroratum is identical to that of R. delavayi. The chloroplast segements show that some R. irroratum individuals share the same haplotype with R. delavayi and others share them with R. decorum.","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&fq=dc.type_filter%3A%E5%AD%A6%E4%BD%8D%E8%AE%BA%E6%96%87&sort_by=2&isNonaffiliated=false&search_type=-1&query1=%25E5%259F%25BA%25E5%259B%25A0%25E6%25B5%2581&order=desc&&fq=dc.project.title_filter%3AThrough%5C+investigating%5C+sympatric%5C+distribution%5C+of%5C+Rhododendron%5C+irroratum%2C%5C+examing%5C+the%5C+variation%5C+of%5C+floral%5C+characters%5C+and%5C+sequencing%5C+the%5C+ITS%5C+and%5C+other%5C+chloroplast%5C+segements%2C%5C+we%5C+find%5C+that%5C+%5C%281%5C%29%5C+R.%5C+irroratum%5C+might%5C+be%5C+of%5C+hybrid%5C+origin%2C%5C+with%5C+its%5C+maternal%5C+parent%5C+R.%5C+delavayi%5C+or%5C+R.%5C+decorum.%5C+%5C%282%5C%29%5C+The%5C+ancestral%5C+haplotype%5C+of%5C+R.%5C+irroratum%5C+might%5C+be%5C+identical%5C+to%5C+that%5C+of%5C+R.%5C+decorum%2C%5C+and%5C+it%5C+is%5C+under%5C+ongoing%5C+introgression%5C+from%5C+R.%5C+delavayi.%5C+1.%5C+The%5C+natural%5C+distribution%2C%5C+Seven%5C+distribution%5C+sites%5C+of%5C+R.%5C+irroratum%5C+in%5C+Guizhou%5C+and%5C+Yunnan%5C+province%5C+were%5C+investigated.%5C+The%5C+result%5C+shows%5C+that%5C+R.%5C+irroratum%5C+is%5C+sympatric%5C+with%5C+R.%5C+delavayi%2C%5C+R.%5C+decorum%5C+and%5C+R.%5C+agastum.%5C+R.%5C+delavayi%5C+is%5C+widespread%5C+across%5C+the%5C+above%5C-mentioned%5C+seven%5C+sites%2C%5C+whereas%5C+R.%5C+agastum%5C+is%5C+scarce%5C+in%5C+DaPingDi%2C%5C+HuaDianBa%5C+and%5C+HeQing%5C+sites.%5C+R.%5C+irroratum%5C+and%5C+R.%5C+agastum%5C+distribute%5C+at%5C+the%5C+higher%5C+elevation%5C+compared%5C+to%5C+that%5C+of%5C+R.%5C+decorum%2C%5C+while%5C+R.%5C+delavayi%5C+is%5C+of%5C+widespread%5C+distribution%5C+across%5C+both%5C+regions%5C+of%5C+R.%5C+decorum%5C+and%5C+R.%5C+irroratum.2.%5C+Floral%5C+variation%5C+of%5C+R.%5C+irroratum%5C+among%5C+populations%2C%5C+The%5C+floral%5C+characters%5C+remain%5C+vary%5C+within%5C+and%5C+among%5C+populations%5C+except%5C+for%5C+the%5C+stamen%5C+number%5C+and%5C+the%5C+petal%5C+number.%5C+Seven%5C+floral%5C+characters%5C+correlates%5C+with%5C+each%5C+other%5C+among%5C+populations%2C%5C+of%5C+28%5C+different%5C+combinations%2C%5C+26%5C+reveal%5C+significant%5C+correlation%2C%5C+and%5C+23%5C+extremely%5C+significant%5C+correlation.%5C+The%5C+PCA%5C+analysis%5C+shows%5C+that%5C+the%5C+first%5C+two%5C+components%5C+account%5C+for%5C+52.18%25%5C+of%5C+the%5C+total%5C+variation.%5C+The%5C+dendrogram%5C+tree%5C+is%5C+divided%5C+into%5C+four%5C+main%5C+parts%2C%5C+roughly%5C+representing%5C+the%5C+respective%5C+populations%2C%5C+which%5C+is%5C+constructed%5C+using%5C+22%5C+R.%5C+irroratum%5C+individuals.%5C+3.%5C+Putative%5C+Development%5C+and%5C+the%5C+transferability%5C+test%5C+of%5C+SSR%5C+makers%2C%5C+Fifteen%5C+microsatellite%5C+loci%5C+were%5C+developed%5C+and%5C+characterized%5C+in%5C+R.%5C+delavayi.%5C+The%5C+average%5C+allele%5C+number%5C+of%5C+these%5C+microsatellites%5C+was%5C+4%5C+per%5C+locus%2C%5C+ranging%5C+from%5C+3%5C+to%5C+6.%5C+The%5C+ranges%5C+of%5C+expected%5C+%5C%28HE%5C%29%5C+and%5C+observed%5C+%5C%28HO%5C%29%5C+heterozygosities%5C+were%5C+0.0365%5C-0.7091%5C+and%5C+0.0263%5C-0.9512%2C%5C+respectively.%5C+Seven%5C+loci%5C+%5C%28R%5C-111%2C%5C+R%5C-112%2C%5C+R%5C-147%2C%5C+R%5C-299%2C%5C+R%5C-320%2C%5C+R%5C-335%2C%5C+and%5C+R%5C-544%5C%29%5C+deviated%5C+significantly%5C+from%5C+the%5C+HWE%5C+%5C%28P%EF%B9%A40.01%5C%29.%5C+No%5C+significant%5C+linkage%5C+disequilibrium%5C+was%5C+detected%5C+between%5C+locus%5C+pairs%5C+except%5C+for%5C+three%5C+locus%5C+pairs%5C%3A%5C+R%5C-299%5C+and%5C+R%5C-544%2C%5C+R%5C-166%5C+and%5C+R%5C-320%2C%5C+R%5C-111%5C+and%5C+R%5C-320.%5C+Cross%5C-species%5C+amplification%5C+in%5C+R.%5C+agastum%2C%5C+R.%5C+decorum%2C%5C+and%5C+R.%5C+irroratum%5C+showed%5C+that%5C+a%5C+subset%5C+of%5C+these%5C+markers%5C+holds%5C+promise%5C+for%5C+congeneric%5C+species%5C+study.4.%5C+ITS%2C%5C+matK%2C%5C+trnH%5C-psbA%5C+and%5C+rbcL%5C+sequences.%5C+R.%5C+delavayi%5C+has%5C+six%5C+sites%5C+different%5C+from%5C+that%5C+of%5C+R.%5C+decorum%5C+in%5C+its%5C+ITS%5C+region%2C%5C+whereas%5C+R.%5C+agastum%5C+reveals%5C+double%5C+peaks%5C+at%5C+the%5C+corresponding%5C+sites%5C+and%5C+R.%5C+irroratum%5C+is%5C+identical%5C+to%5C+that%5C+of%5C+R.%5C+delavayi.%5C+The%5C+chloroplast%5C+segements%5C+show%5C+that%5C+some%5C+R.%5C+irroratum%5C+individuals%5C+share%5C+the%5C+same%5C+haplotype%5C+with%5C+R.%5C+delavayi%5C+and%5C+others%5C+share%5C+them%5C+with%5C+R.%5C+decorum."},{"jsname":"Tupistra pingbianensis J. L. Huang & X. Z. Liu, is a newly described perennial herb narrowly distributed in South-east Yunnan, China. It belongs to genera Tupistra Ker Gawler(Liliaceae). It usually occurs on outcrops of bare rock, or occasionally as an epiphyte on tree trunks covered with humus and moss. T. pingbianensis is unusual in that it exhibits rarity according to three different ways of measuring rarity, i.e. it has a small geographical range, is a habitat specialist, and always has low abundance where it occurs. Because of this, T. pingbianensis has been listed as an endangered species and catalogued in the Chinese Species Red List. In order to discuss the causes of rarity of T. pingbianensis, the multidisciplinary investigations of the seed and seedling establishment, cytology, breeding system, and population genetic structure of the endangered T. pingbianensis were performed in this thesis. Besides, the corresponding conservation strategies were also proposed according to the above-mentioned. The main results are summarized as follows:1. Biological traits of T. pingbianensis,T. pingbianensis is a perennial herbaceous with a creeping rhizome, thick basal leaves, and an inflorescence that is a terminal spike. Florescence is from November to December, while fruiting occurs between November and December in the next year. Reproduction and spread also occurs clonally via rhizomes, most seeds simply fall from the mother plant and germinate where they land. It occurs on outcrops of bare rock, or occasionally as an epiphyte on tree trunks covered with humus and moss, which are naturally rare habitat. Throughout its small geographical range, T. pingbianensis occurs as discrete, small populations size. 2. Seed germination traits of T. pingbianensis,Seed morphology was observed and effects of substrates soil types, light, sowing depth on germination percentage of the species T. pingbianensis were investigated primarily. The results showed that the average seed size was (1.17±0.02) cm × (0.79±0.01) cm × (0.77±0.01) cm (length × width × thickness), per-hundred-seed-weight was about 35.03±0.12g. Among the three different substrates soil types and sowing depths, seeds of T. pingbianensis germinate best in alkalescence soil and shallow sowing depth (2cm). It could germinate in the both light and dark, but the germination rate can be accelerated by light obviously. Its seed has high germination rate not just in greenhouse, but also in the field. We considered that this is a good strategy to expand its population in the special habit.3. Karyotype evolution status of T. pingbianensis,The karyotype of total eight species in Campylandra, Tupistra and Aspidistra from China were reported. Considering Tupistra has the similar morphological character with Campylandra but resemble Aspidistra in karyotype. The results support the earlier study that Tupistra is a transition between Compylandra and Aspidistra. Besides, our results also showes that the T. pingbianensis and T. fungilliformis has higher karyotype asymmetry than other species in this genera, which means these species have higher karyotype evolution status. 4. Reproduction ecology of T. pingbianensis, The flower phenology, pollinators of T. pingbianensis were documented herein. We also examined the breeding system of T. pingbianensis and seed fitness traits to determine what forms of pollination and mating occur in this naturally rare species, and is there evidence of inbreeding depression in its populations. The results shows that the flowers opened 10-15 days, which suggest stigma and pollen can keep high vitality for a long time (10-15 days). The only pollinators observed on T. pingbianensis flowers were ants (Aphaenogaster smythiesii Forel,Formicidea), springtail (Hypogastrura sp., Hypogastruridae, Collembola) and one species of beetles (Anomala corpulenta Motsch, Rutelidae). These pollinators generally have restricted movement capacities and hence promote geitonogamy or mating between individuals in close proximity within populations. The results of out crossing index (OCI) pollination experiments in our study suggest that T. pingbianensis has an animal-pollinated, mixed selfing and outcrossing breeding systems. However, a pollination experiment also fail to detect significant inbreeding depression upon F1 fruit set, seed weight and germinate rate fitness-traits. Since naturally rare species T. pingbianensis is not seriously genetically impoverished and likely to have adapted to tolerating a high level of inbreeding early in its history. 5. Conservation genetic of T. pingbianensis, The levels and partitioning of genetic diversity were investigated in Tupistra pingbianensis. Here genetic diversity and patterns of genetic variation within and among 11 populations were analyzed using AFLP markers with 97 individuals across its whole geographical range. High levels of genetic variation were revealed both at the species level (P99 = 96.012%; Ht = 0.302) and at the population level (P99 = 51.41%; Hs = 0.224). Strong genetic differentiation among populations was also detected (FST = 0.2961; ⍬Ⅱ= 0.281), which corresponded to results reported for typical animal-pollinated, mixed selfing and outcrossing plant species. Special habitat and its life history traits may play an important role in shaping the genetic diversity and the genetic structure of this species. Based on the special habitat in T. pingbianensis, the most suitable strategy for its conservation is the protection of its habitat. Moreover, given the observed strong genetic differentiation among populations of T. pingbianensis, the preservation of genetic diversity in this species will require the protection of many populations as possible to maintain the current levels of genetic variability.","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&fq=dc.type_filter%3A%E5%AD%A6%E4%BD%8D%E8%AE%BA%E6%96%87&sort_by=2&isNonaffiliated=false&search_type=-1&query1=%25E5%259F%25BA%25E5%259B%25A0%25E6%25B5%2581&order=desc&&fq=dc.project.title_filter%3ATupistra%5C+pingbianensis%5C+J.%5C+L.%5C+Huang%5C+%5C%26%5C+X.%5C+Z.%5C+Liu%2C%5C+is%5C+a%5C+newly%5C+described%5C+perennial%5C+herb%5C+narrowly%5C+distributed%5C+in%5C+South%5C-east%5C+Yunnan%2C%5C+China.%5C+It%5C+belongs%5C+to%5C+genera%5C+Tupistra%5C+Ker%5C+Gawler%5C%28Liliaceae%5C%29.%5C+It%5C+usually%5C+occurs%5C+on%5C+outcrops%5C+of%5C+bare%5C+rock%2C%5C+or%5C+occasionally%5C+as%5C+an%5C+epiphyte%5C+on%5C+tree%5C+trunks%5C+covered%5C+with%5C+humus%5C+and%5C+moss.%5C+T.%5C+pingbianensis%5C+is%5C+unusual%5C+in%5C+that%5C+it%5C+exhibits%5C+rarity%5C+according%5C+to%5C+three%5C+different%5C+ways%5C+of%5C+measuring%5C+rarity%2C%5C+i.e.%5C+it%5C+has%5C+a%5C+small%5C+geographical%5C+range%2C%5C+is%5C+a%5C+habitat%5C+specialist%2C%5C+and%5C+always%5C+has%5C+low%5C+abundance%5C+where%5C+it%5C+occurs.%5C+Because%5C+of%5C+this%2C%5C+T.%5C+pingbianensis%5C+has%5C+been%5C+listed%5C+as%5C+an%5C+endangered%5C+species%5C+and%5C+catalogued%5C+in%5C+the%5C+Chinese%5C+Species%5C+Red%5C+List.%5C+In%5C+order%5C+to%5C+discuss%5C+the%5C+causes%5C+of%5C+rarity%5C+of%5C+T.%5C+pingbianensis%2C%5C+the%5C+multidisciplinary%5C+investigations%5C+of%5C+the%5C+seed%5C+and%5C+seedling%5C+establishment%2C%5C+cytology%2C%5C+breeding%5C+system%2C%5C+and%5C+population%5C+genetic%5C+structure%5C+of%5C+the%5C+endangered%5C+T.%5C+pingbianensis%5C+were%5C+performed%5C+in%5C+this%5C+thesis.%5C+Besides%2C%5C+the%5C+corresponding%5C+conservation%5C+strategies%5C+were%5C+also%5C+proposed%5C+according%5C+to%5C+the%5C+above%5C-mentioned.%5C+The%5C+main%5C+results%5C+are%5C+summarized%5C+as%5C+follows%5C%3A1.%5C+Biological%5C+traits%5C+of%5C+T.%5C+pingbianensis%2CT.%5C+pingbianensis%5C+is%5C+a%5C+perennial%5C+herbaceous%5C+with%5C+a%5C+creeping%5C+rhizome%2C%5C+thick%5C+basal%5C+leaves%2C%5C+and%5C+an%5C+inflorescence%5C+that%5C+is%5C+a%5C+terminal%5C+spike.%5C+Florescence%5C+is%5C+from%5C+November%5C+to%5C+December%2C%5C+while%5C+fruiting%5C+occurs%5C+between%5C+November%5C+and%5C+December%5C+in%5C+the%5C+next%5C+year.%5C+Reproduction%5C+and%5C+spread%5C+also%5C+occurs%5C+clonally%5C+via%5C+rhizomes%2C%5C+most%5C+seeds%5C+simply%5C+fall%5C+from%5C+the%5C+mother%5C+plant%5C+and%5C+germinate%5C+where%5C+they%5C+land.%5C+It%5C+occurs%5C+on%5C+outcrops%5C+of%5C+bare%5C+rock%2C%5C+or%5C+occasionally%5C+as%5C+an%5C+epiphyte%5C+on%5C+tree%5C+trunks%5C+covered%5C+with%5C+humus%5C+and%5C+moss%2C%5C+which%5C+are%5C+naturally%5C+rare%5C+habitat.%5C+Throughout%5C+its%5C+small%5C+geographical%5C+range%2C%5C+T.%5C+pingbianensis%5C+occurs%5C+as%5C+discrete%2C%5C+small%5C+populations%5C+size.%5C+2.%5C+Seed%5C+germination%5C+traits%5C+of%5C+T.%5C+pingbianensis%2CSeed%5C+morphology%5C+was%5C+observed%5C+and%5C+effects%5C+of%5C+substrates%5C+soil%5C+types%2C%5C+light%2C%5C+sowing%5C+depth%5C+on%5C+germination%5C+percentage%5C+of%5C+the%5C+species%5C+T.%5C+pingbianensis%5C+were%5C+investigated%5C+primarily.%5C+The%5C+results%5C+showed%5C+that%5C+the%5C+average%5C+seed%5C+size%5C+was%5C+%5C%281.17%C2%B10.02%5C%29%5C+cm%5C+%C3%97%5C+%5C%280.79%C2%B10.01%5C%29%5C+cm%5C+%C3%97%5C+%5C%280.77%C2%B10.01%5C%29%5C+cm%5C+%5C%28length%5C+%C3%97%5C+width%5C+%C3%97%5C+thickness%5C%29%2C%5C+per%5C-hundred%5C-seed%5C-weight%5C+was%5C+about%5C+35.03%C2%B10.12g.%5C+Among%5C+the%5C+three%5C+different%5C+substrates%5C+soil%5C+types%5C+and%5C+sowing%5C+depths%2C%5C+seeds%5C+of%5C+T.%5C+pingbianensis%5C+germinate%5C+best%5C+in%5C+alkalescence%5C+soil%5C+and%5C+shallow%5C+sowing%5C+depth%5C+%5C%282cm%5C%29.%5C+It%5C+could%5C+germinate%5C+in%5C+the%5C+both%5C+light%5C+and%5C+dark%2C%5C+but%5C+the%5C+germination%5C+rate%5C+can%5C+be%5C+accelerated%5C+by%5C+light%5C+obviously.%5C+Its%5C+seed%5C+has%5C+high%5C+germination%5C+rate%5C+not%5C+just%5C+in%5C+greenhouse%2C%5C+but%5C+also%5C+in%5C+the%5C+field.%5C+We%5C+considered%5C+that%5C+this%5C+is%5C+a%5C+good%5C+strategy%5C+to%5C+expand%5C+its%5C+population%5C+in%5C+the%5C+special%5C+habit.3.%5C+Karyotype%5C+evolution%5C+status%5C+of%5C+T.%5C+pingbianensis%2CThe%5C+karyotype%5C+of%5C+total%5C+eight%5C+species%5C+in%5C+Campylandra%2C%5C+Tupistra%5C+and%5C+Aspidistra%5C+from%5C+China%5C+were%5C+reported.%5C+Considering%5C+Tupistra%5C+has%5C+the%5C+similar%5C+morphological%5C+character%5C+with%5C+Campylandra%5C+but%5C+resemble%5C+Aspidistra%5C+in%5C+karyotype.%5C+The%5C+results%5C+support%5C+the%5C+earlier%5C+study%5C+that%5C+Tupistra%5C+is%5C+a%5C+transition%5C+between%5C+Compylandra%5C+and%5C+Aspidistra.%5C+Besides%2C%5C+our%5C+results%5C+also%5C+showes%5C+that%5C+the%5C+T.%5C+pingbianensis%5C+and%5C+T.%5C+fungilliformis%5C+has%5C+higher%5C+karyotype%5C+asymmetry%5C+than%5C+other%5C+species%5C+in%5C+this%5C+genera%2C%5C+which%5C+means%5C+these%5C+speci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now, little data about the plant reproductive characters and ecological adaptation have been documented in the species-rich Sino-Himalaya region. Anemone rivularis (Ranunculaceae), mainly occurs in this area, and is of particular interest for its unique flower heliotropic movement and sex allocation strategy. In this study, we investigated the reproductive biology and adaptation mechanism of A. rivularis on the Yulong Snow Mountain Lijiang, northwestern Yunnan. The main results were summarized as follows: 1 Reproductive biology, The mating system, flowering phenology, floral morphology and pollination efficiency were examined in Anemone rivularis. This species is a perennial plant with hermaphroditic flowers, and its inflorescence is an acropetal cyme with protogynous flowers. In contrast to some self-incompatible species reported in Anemone, our results proved that A. rivularis was self-compatible. The seed set under natural pollination was more than 70%, indicating that there was no pollen limitation. Meanwhile, the seed set of artificial-cross-pollinated flowers was significantly higher than that of artificial-self-pollinated flowers, suggesting that the mixed mating system of A. rivularis was based on cross-pollination, and the results also supported a favor of outcrossing reproductive strategy for perennial herbs as some previous reports. Clearly, the reproductive strategy of A. rivularis prefer to cross-pollination in the alpine Sino-Himalayan region, in order to improve the reproductive fitness. 2 Flower heliotropism, The flower heliotropic movement mechanism, influences and adaptive significance were investigated in Anemone rivularis. The results indicated that under natural conditions, a treatment of pistils and stamens removal, flowers of A. rivularis retained accurately sun-tracking behavior through daytime, and the petals were found to close in the evening; but flowers would lose heliotropic movement if tepals were removed, with peduncles keeping a vertical orientation. This indicated that the tepals were crucial for heliotropic behavior. The flower heliotropism of A. rivularis was sensitive to blue light frequencies rather than red frequencies, suggesting that the light signal must be received by tepals, which driving the peduncles to bend due to differential cell elongation along the two sides of peduncle. Furthermore, there was a close relationship between diurnal heliotropic movements and temperature of flower interior in A. rivularis. Flowers with tepals could provide a relatively narrow range of temperatures, in comparison with flowers lacking tepals, in order to maintain reproductive organs in functional floral temperature range. Our study demonstrated that both the development of pistils and stamens and the visiting of insects could benefit from flower heliotropism in A. rivularis.3 Sex allocation, Floral traits, male and female functions, reproductive fitness, and sex allocation hypotheses were assessed in intra-inflorescence of Anemone rivularis. Though the inflorescence showed an acropetal flower-opening sequence as well as in many flowering species (early flowers are proximal and late flowers are distal), it engaged different sex allocation strategy. Our observations documented that the late-opening flowers of each inflorescence produce significantly more ovules and fewer pollen grains compared to early-opening flowers, and the pollen:ovule ratio (P:O) declined obviously from primary flower position to tertiary flower position, suggesting that later flowers would tend to favor female-bias investment. The nature-pollinating seed set among flower positions was constant, and there was no resource trade-off between flower size and sexual organs in this species, and the first-removal treatment did not lead to a significant increase in seed set of flowers in the later position. Thus, early-opening flower may not represent a significant competitor for resources with late-opening flowers on the same inflorescence, suggesting that the pattern of floral design and floral display may be determined prior to flowering and is inalterable by resources during flowering. So the female-biased allocation of distal flowers in A. rivularis may be resulted from the the selection by variation in the mating 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喜马拉雅-横断山区代表类群的进化历史
学位论文
: 中国科学院大学, 2022
作者:
Hum Kala Rana
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提交时间：2024/05/14
生物地理分界线
Biogeographical barriers
遗传-环境相关性
Genetic-environment association
古河流演变
Paleo-drainage evolution
青藏高原
Qinghai-Tibetan Plateau s.l.
RAD-seq
RAD-seq
天空岛，物种分布区模拟
Sky Island
Species distribution modeling
极小种群野生植物显脉木兰的保护遗传学研究
学位论文
: 中国科学院大学, 2022
作者:
杨丰懋
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保护遗传学，简化基因组，种群历史动态，极小种群野生植物，显脉木兰
Conservation genetics, RAD-seq, Demographic history, Plant Species with Extremely Small Populations, Magnolia fistulosa
杜鹃花属粉红爆杖花自然杂交与生态适应研究
学位论文
: 中国科学院大学, 2022
作者:
郑伟
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杜鹃花属，粉红爆杖花，自然杂交，进化，生态位分化
Rhododendron, R. × duclouxii, natural hybridization, evolution, niche differentiation
卷鞘鸢尾参考转录组的组装方法评估及应用
学位论文
: 中国科学院大学, 2022
作者:
朱张士昌
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非模式生物,转录组测序,种质资源,鸢尾属,群体遗传
Non-Model Organism,RNA-Seq,Germplasm Resource,Iris,Population Genetics
豆科系统发育基因组学
学位论文
: 中国科学院大学, 2022
作者:
张荣
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豆科，叶绿体基因组，线粒体基因组，转录组，深度和族级分支，冲 突，系统发育基因组学，快速辐射演化
Legumimosae, plastome, mitochondrial genome, transcriptome, deep and tribal lineages, conflict, phylogenomics, rapid radiation
滇缅泰地区巨竹属（禾本科：竹亚科）的分类修订
学位论文
, 2020
作者:
许祖昌
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提交时间：2023/11/02
亚洲热带木本竹类系统发育基因组学研究
学位论文
, 2020
作者:
刘泾霞
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提交时间：2023/11/02
互对醉鱼草的自然杂交起源与历史变迁研究
学位论文
, 2020
作者:
廖荣丽
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提交时间：2023/11/02
来江藤属系统发育及花性状演化
学位论文
, 2020
作者:
陈哲
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浏览/下载：29/1
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提交时间：2023/11/02
人参属的系统发育及羽叶三七复合群的遗传关系研究
学位论文
, 2020
作者:
周明媚
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提交时间：2023/11/02
