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中国科学院昆明植物研究所知识管理系统
Knowledge Management System of Kunming Institute of Botany,CAS
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6 could use lots of photosynthates, but contributed little to the accumulation of biomass. 4. Photosynthetic rate of P. armeniacum decreased a little at the noon, and the highest photosynthetic rate was observed at 10:00h in the greenhouse. The variation of photosynthetic rate was in the same trend as stomatal conductance. Higher relative humidity seemed to be the key for higher photosynthetic rate in P. armeniacum. 5. The photosynthetic capacity of C. flavum was statistically larger than that of P. armeniacum. The lower leaf photosynthetic capacity of P. armeniacum was related to its lower leaf nitrogen concentration,leaf phosphorus concentration and enzyme activities. Meanwhile, the extremely lower stomatal conductance and internal mesophyll conductance might greatly limit the photosynthetic capacity of P. armeniacum. The lower stomatal conductance and photosynthetic rate of Paphiopedilum might partially caused by the lack of chloroplasts in the guard cell of Paphiopedilum. Compared with C. flavum, P. armeniacum was more fond of shade environment.6. The short longevity leaf of Cypripedium had bigger photosynthetic capacity and greater potential for fast growth. But the longer LL of Paphiopedilum enhanced nutrient conservation which could compensate its lower photosynthetic capacity. The short longevity leaf of Cypripedium usually had higher photosynthetic rate per unit leaf mass and dark respiration rate, and photosynthetic capacity decreased fast with leaf age. However, for Paphiopedilum, the situation was the opposite. 7. Compared with Cypripedium, Paphiopedilum had higher water use efficiency and lower photosynthetic nitrogen use efficiency. 8. The leaf of Paphiopedilum had higher leaf construction cost and longer repayment time than that of Cypripedium. The leaf structures and physiological functions of Paphiopedilum and Cypripedium reflected the adaptation to their habitats. The leaf morphological and physiological evolution of Paphiopedilum was related to water and resource-conserving traits in the karst habitat. The leaf traits of Cypripedium were the adaptation to the environment rich in water and nutrients but easy to change with seasons.Our results provided evidence of divergent evolution of congeneric orchids under natural 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and Cypripedium，known as slipper orchids in horticulture, belong to the subfamily Cypripedioideae of the Orchidaceae. Although they are closely related phylogenetically, there are significant differences in leaf traits and geographical distributions between two genera. This dissertation includes the following sections: (1) the leaf functional traits were compared in six species of the two genera; (2) the physiological responses of P. armeniacum to different water regimes, light regimes and low temperature; (3) the leaf phenotypic plastics of C. flavum in response to the different light condition and the photosynthetic characteristics of three Cypripedium species during sexual reproduction. The aims are to understand the convergent and divergent evolution between the two genera in leaf traits and their adaptive significances, and the leaf plastic responses to different levels of resources. Such information could provide scientific basis for conservation and domestication of Paphiopedilum and Cypripedium. The results are given below:1. Compared with Paphiopedilum, Cypripedium showed significantly higher photosynthetic rate (Pmax), leaf nitrogen content (Na), photosynthetic nitrogen utilization (PNUE), the fractions of leaf nitrogen partitioning in carboxylation (PC) and bioenergetics (PB), specific leaf area (SLA), ratio of leaf chlorophyll a and b (Chla/b), but significantly lower leaf construction cost (CC) and the ratio of leaf carbon content to leaf nitrogen (C/N). These leaf traits of Cypripedium are considered as the adaptation to short growing period and rich soil nutrients in the alpine habitats. Conversely, the long life span, low Pmax and mesophyll conductance (gm) but high SLA, CC and C/N in Paphiopedilum indicated that the adaptation to low-light, limited-nutrient habitat in the limestone area. As a sympatric species of Paphiopedilum, C. lentiginosum not only kept phylogenetically leaf traits of Cypripedium, suchas stomatal conductance (gs), Pmax, PNUE and dormant in winter, but also possessed many leaf traits which is similar to that in Paphiopedilum, such as relative stomatal limitations (RSL), gm, the ratio of leaf chlorophyll a and b (Chl a/b), fraction of leaf nitrogen allocated to light-harvesting components (PL). These results indicated the convergent and divergent evolution of Paphiopedilum and Cypripedium in leaf traits.2. Paphiopedilum. armeniacum exhibited a high plasticity of leaf photosynthetic function in response to different light regimes, but the responses changes with the time. Due to grow under low light habitat, P. armeniacum grown under 50% shade (HL) had the significantly lowest Pmax than the plants grown under 75% shade (ML) and 95% shade (LL) after six months. However, after twelve months, the Pmax of the plants grown under HL increased significantly and then became the highest one among three levels of light. It is also found that leaf dry mass per unit area (LMA), leaf stomatal conductance (gS), internal mesophyll conductance (gm), the fraction of leaf nitrogen partitioning in photosynthetic carboxylation (PC), bioeneretics (PB) were greatly influenced by irradiance. The plants grown under HL increased gS, gm, PC, PB to increase Pmax. In addition, the plants grown under HL had the highest ratio of total chlorophyll content to total Carotenoid content (Car/Chl) while the plants grown under LL had the lowest ratio of leaf chlorophyll a and b (Chl a/b). As a result, plasticity of leaf photosynthetic physiology of P. armeniacum in response to different light regimes depended largely on leaf nitrogen partitioning and leaf structure. As for the numbers of flowering and fruiting, ML was the best light level.3. The responses of P. armeniacum to different water regimes were not significantly different. But the Pmax and the maximum photochemical efficiency of PSⅡ (Fv/Fm) decreased with the increased frequency of watering. The reasons were that the plants have high respiration rate (Rd) and make more use of light energy to oxidation cycle. The plants watered every eight days (MW) and every twenty days (LW) had higher Pmax than the plant watered every four days (HW) mainly because of the higher PC and PB. Besides, the leaves of P. armeniacum had excellent property for holding water also contributed to the high photosynthetic capacity.4. Paphiopedilum. armeniacum was very sensitive to the low temperature. The plants significantly decreased photosynthetic capacity after grown under 4℃ for three days and the photosynthetic machinery was destroyed after fifteen days. The photosynthetic capacity of P. armeniacum exhibited no change at 10℃ and 15℃.5. Cypripedium flavum of four habitats (DB, XRD, XZD and TSQ) with different light intensity exhibited different photosynthetic characteristics after transplanted to the same environment in Kunming. Among the habitats, the light intensity of DB was the highest while XRD was the lowest. The light intensity of XZD and TSQ were not significantly difference. Among all the plants in Kunming, the plants of DB had the significantly highest Pmax but the plants of XRD had the lowest Pmax. The light saturation point (LSP) and photosynthetic nitrogen use efficiency (PNUE) agreed well with the light intensity of four habitats and contributed to the high Pmax of DB. The LMA, Chl and leaf nitrogen content were not different among all the plants. C. flavum exhibited sensitively response to the change of light in leaf construction while kept the plasticity of leaf photosynthetic characteristics which developed from its own habitat.6. The photosynthetic capacity of C. tibeticum and C. flavum were significantly increased at the flowering stage. For these two species, the significantly increased Amax were closely related to the maximum carboxylation rate by ribulose-1, 5-bisphosphate carboxylase/oxygenase (Vcmax), photon saturated rate of electron transport (Jmax), the rate of triose phosphate utilization (TPU) and actual quantum efficiency of the photosystem II photochemistry (ΦPSII) respectively. However, flowering almost did not affect the photosynthetic capacity of C. guttatum. C. guttatum had the smallest plant size, the leaf area, the volume of labellum and the volume of fruit, but the biggest fruit volume per leaf area among three species. These results indicated that for C. flavum and C. tibeticum there were a physiological mechanism in photosynthesis to compensate the cost of flowering as well as increased resource acquisitions, which would be beneficial to the survival or future flowering of the plant. C. gutattum could keep a steady photosynthetic capacity during life history. This kind of pattern could decrease the effect of the reproductive costs as much as possible. In contrast to C. flavum and C. tibeticum, C. gutattum possessed a more economical and effective reproductive pattern which maybe related to its wider distribution.In conclusion, Paphiopedilum and Cypripedium have significantly different leaf traits which agree well with their habitats and there is a divergent and convergent evolution between the two genera. P. armeniacum is much tolerant and responsive to varying water and light availability but very sensitivity to the low temperature. Confronting the suddenly change of light environment, C. flavum can respond sensitively to the change of light in leaf construction but the plasticity of leaf photosynthetic characteristics which developed from its own habitat can hold for the next growing season. In contrast to C. flavum and C. tibeticum, C. gutattum possesses a more economical and effective reproductive pattern which maybe related to its wider distribution. The study of the relationship between the two genera, the response and tolerance to the environmental factors of the two genera are important for understanding the adaptation and evolution of the 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sect. Cyathophora is a distinctive group endemic to the eastern Himalaya-Hengduan Mountains region. It was regarded as a ‘grex’ or section and included all four general corolla types of Pedicularis. A unique feature is that the leaf and bract bases are fused together to form a cup-like structure around the stem at each node. Our molecular phylogenetic study indicated that P. sect. Cyathophora was a monophyletic lineage, although the relationships among species were not fully resolved. P. rex C. B. Clarke ex Maxim. is the most various and wide-distributed species in P. sect. Cyathophora. It is extremely variable in wild populations, and elicits a vast quantity of morpho-variations, which qualifies the species as one of the most diverse and complex taxa of the genus Pedicularis. In this study, the phylogeny of P. sect. Cyathophora was reconstructed based on four chloroplast genes (matK, rbcL, trnH-psbA, and trnL-F) and one nuclear gene, ITS, using 78 samples, with an emphasis on the P. rex complex. Also morphometric analyses were used to assess the morphological variation in P. rex complex and taxonomic revisions were presented for some taxa of this complex. Thirteen microsatellite markers were developed from three microsatellite-enriched libraries (AG, AC and AAG) of P. rex with a modified biotin-streptavidin capture technique, which could be used for further studies on the genetic diversity and population structure of this species and its congeners. Main results were summarized as follows: 1. Molecular phylogeny of P. sect. Cyathophora H. L. Li， The phylogeny of P. sect. Cyathophora was reconstructed based on chloroplast matK, rbcL, trnH-psbA, trnL-F and one nuclear gene, ITS, involving six species and 11 outgroups with a total of 78 samples. Our study showed that the monophyly of this group was strongly supported, in which P. superba was monophyletic based on chloroplast genes. The samples of P. cyathophylloides from Sichuan nested within P. cyathophylla. Ancient hybridization may occur between the two species. P. xiangchengensis is better to treat as a synonym of P. cyathophylla. Especially, P. ser. Reges was complicated, in which the individuals from different populations in the same species were rarely monophyletic. In addition, individuals forming monophyletic groups were not geographically close. In P. ser. Reges, lineage sorting of chloroplast DNA variations following rapid divergence is likely to have caused complex phylogeny of the taxa, which was reconstructed in our study. Hybridzation, introgression, lineage sorting and adaptive radiation may play important roles in the evolution of these taxa studied. Multiple, independent data sets are needed for resolving phylogenetic relationships of rapidly diverged lineages in P. sect. Cyathophora. 2. The taxonomic revision of P. rex complex，A total of 165 specimens with about 14 vegetative and eight reproductive characters were involved in the morphometric analysis. The results of PCA did not support six taxa for it emerged considerable morphological overlap. P. rex var. rockii was promoted to subspecies level for its prominent performance in PCA. Three taxa, P. rex subsp. pseudocyathus, P. rex subsp. zayuensis and P. rex subsp. parva, were merged into P. rex subsp. rex. Then P. rex subsp. lipskyana kept still at its rank for its purple red corolla color. The result of DA led to the selection of diagnostic traits between the P. rex and P. thamnophila. P. rex has less dissected leaves than P. thamnophila. P. rex is various in leaves number in whole, but P. thamnophila has stable three leaves in whole. Itpossesses a smaller corolla than P. rex. But P. thamnophila subsp. cupuliformis is a little different from P. thamnophila subsp. thamnophila in some vegetative characters, and it has purple stripes with the lower lip, so it is kept at the subspecies level. 3. Isolation and characterization of microsatellite loci from P. rex， We developed 13 microsatellite markers from three microsatellite-enriched libraries (AG, AC and AAG) of P. rex with a modified biotin-streptavidin capture technique. Polymorphism of each locus was assessed in 22 individuals with representation of five populations of P. rex. Additionally, among the 13 identified microsatellite markers, eleven of them were successfully amplified in species P. thamnophila, and five of them showed polymorphisms. This study may provide important information for further investigation on the population genetics, introduction and acclimatization of P. rex and its congeners.","jscount":"1","jsurl":"/simple-search?field1=all&rpp=10&accurate=false&advanced=false&fq=location.comm.id%3A1&sort_by=2&isNonaffiliated=false&search_type=-1&query1=phylogenetic%2Btree&order=desc&&fq=dc.project.title_filter%3APedicularis%5C+sect.%5C+Cyathophora%5C+is%5C+a%5C+distinctive%5C+group%5C+endemic%5C+to%5C+the%5C+eastern%5C+Himalaya%5C-Hengduan%5C+Mountains%5C+region.%5C+It%5C+was%5C+regarded%5C+as%5C+a%5C+%E2%80%98grex%E2%80%99%5C+or%5C+section%5C+and%5C+included%5C+all%5C+four%5C+general%5C+corolla%5C+types%5C+of%5C+Pedicularis.%5C+A%5C+unique%5C+feature%5C+is%5C+that%5C+the%5C+leaf%5C+and%5C+bract%5C+bases%5C+are%5C+fused%5C+together%5C+to%5C+form%5C+a%5C+cup%5C-like%5C+structure%5C+around%5C+the%5C+stem%5C+at%5C+each%5C+node.%5C+Our%5C+molecular%5C+phylogenetic%5C+study%5C+indicated%5C+that%5C+P.%5C+sect.%5C+Cyathophora%5C+was%5C+a%5C+monophyletic%5C+lineage%2C%5C+although%5C+the%5C+relationships%5C+among%5C+species%5C+were%5C+not%5C+fully%5C+resolved.%5C+P.%5C+rex%5C+C.%5C+B.%5C+Clarke%5C+ex%5C+Maxim.%5C+is%5C+the%5C+most%5C+various%5C+and%5C+wide%5C-distributed%5C+species%5C+in%5C+P.%5C+sect.%5C+Cyathophora.%5C+It%5C+is%5C+extremely%5C+variable%5C+in%5C+wild%5C+populations%2C%5C+and%5C+elicits%5C+a%5C+vast%5C+quantity%5C+of%5C+morpho%5C-variations%2C%5C+which%5C+qualifies%5C+the%5C+species%5C+as%5C+one%5C+of%5C+the%5C+most%5C+diverse%5C+and%5C+complex%5C+taxa%5C+of%5C+the%5C+genus%5C+Pedicularis.%5C+In%5C+this%5C+study%2C%5C+the%5C+phylogeny%5C+of%5C+P.%5C+sect.%5C+Cyathophora%5C+was%5C+reconstructed%5C+based%5C+on%5C+four%5C+chloroplast%5C+genes%5C+%5C%28matK%2C%5C+rbcL%2C%5C+trnH%5C-psbA%2C%5C+and%5C+trnL%5C-F%5C%29%5C+and%5C+one%5C+nuclear%5C+gene%2C%5C+ITS%2C%5C+using%5C+78%5C+samples%2C%5C+with%5C+an%5C+emphasis%5C+on%5C+the%5C+P.%5C+rex%5C+complex.%5C+Also%5C+morphometric%5C+analyses%5C+were%5C+used%5C+to%5C+assess%5C+the%5C+morphological%5C+variation%5C+in%5C+P.%5C+rex%5C+complex%5C+and%5C+taxonomic%5C+revisions%5C+were%5C+presented%5C+for%5C+some%5C+taxa%5C+of%5C+this%5C+complex.%5C+Thirteen%5C+microsatellite%5C+markers%5C+were%5C+developed%5C+from%5C+three%5C+microsatellite%5C-enriched%5C+libraries%5C+%5C%28AG%2C%5C+AC%5C+and%5C+AAG%5C%29%5C+of%5C+P.%5C+rex%5C+with%5C+a%5C+modified%5C+biotin%5C-streptavidin%5C+capture%5C+technique%2C%5C+which%5C+could%5C+be%5C+used%5C+for%5C+further%5C+studies%5C+on%5C+the%5C+genetic%5C+diversity%5C+and%5C+population%5C+structure%5C+of%5C+this%5C+species%5C+and%5C+its%5C+congeners.%5C+Main%5C+results%5C+were%5C+summarized%5C+as%5C+follows%5C%3A%5C+1.%5C+Molecular%5C+phylogeny%5C+of%5C+P.%5C+sect.%5C+Cyathophora%5C+H.%5C+L.%5C+Li%EF%BC%8C%5C+The%5C+phylogeny%5C+of%5C+P.%5C+sect.%5C+Cyathophora%5C+was%5C+reconstructed%5C+based%5C+on%5C+chloroplast%5C+matK%2C%5C+rbcL%2C%5C+trnH%5C-psbA%2C%5C+trnL%5C-F%5C+and%5C+one%5C+nuclear%5C+gene%2C%5C+ITS%2C%5C+involving%5C+six%5C+species%5C+and%5C+11%5C+outgroups%5C+with%5C+a%5C+total%5C+of%5C+78%5C+samples.%5C+Our%5C+study%5C+showed%5C+that%5C+the%5C+monophyly%5C+of%5C+this%5C+group%5C+was%5C+strongly%5C+supported%2C%5C+in%5C+which%5C+P.%5C+superba%5C+was%5C+monophyletic%5C+based%5C+on%5C+chloroplast%5C+genes.%5C+The%5C+samples%5C+of%5C+P.%5C+cyathophylloides%5C+from%5C+Sichuan%5C+nested%5C+within%5C+P.%5C+cyathophylla.%5C+Ancient%5C+hybridization%5C+may%5C+occur%5C+between%5C+the%5C+two%5C+species.%5C+P.%5C+xiangchengensis%5C+is%5C+better%5C+to%5C+treat%5C+as%5C+a%5C+synonym%5C+of%5C+P.%5C+cyathophylla.%5C+Especially%2C%5C+P.%5C+ser.%5C+Reges%5C+was%5C+complicated%2C%5C+in%5C+which%5C+the%5C+individuals%5C+from%5C+different%5C+populations%5C+in%5C+the%5C+same%5C+species%5C+were%5C+rarely%5C+monophyletic.%5C+In%5C+addition%2C%5C+individuals%5C+forming%5C+monophyletic%5C+groups%5C+were%5C+not%5C+geographically%5C+close.%5C+In%5C+P.%5C+ser.%5C+Reges%2C%5C+lineage%5C+sorting%5C+of%5C+chloroplast%5C+DNA%5C+variations%5C+following%5C+rapid%5C+divergence%5C+is%5C+likely%5C+to%5C+have%5C+caused%5C+complex%5C+phylogeny%5C+of%5C+the%5C+taxa%2C%5C+which%5C+was%5C+reconstructed%5C+in%5C+our%5C+study.%5C+Hybridzation%2C%5C+introgression%2C%5C+lineage%5C+sorting%5C+and%5C+adaptive%5C+radiation%5C+may%5C+play%5C+important%5C+roles%5C+in%5C+the%5C+evolution%5C+of%5C+these%5C+taxa%5C+studied.%5C+Multiple%2C%5C+independent%5C+data%5C+sets%5C+are%5C+needed%5C+for%5C+resolving%5C+phylogenetic%5C+relationships%5C+of%5C+rapidly%5C+diverged%5C+lineages%5C+in%5C+P.%5C+sect.%5C+Cyathophora.%5C+2.%5C+The%5C+taxonomic%5C+revision%5C+of%5C+P.%5C+rex%5C+complex%EF%BC%8CA%5C+total%5C+of%5C+165%5C+specimens%5C+with%5C+about%5C+14%5C+vegetative%5C+and%5C+eight%5C+reproductive%5C+characters%5C+were%5C+involved%5C+in%5C+the%5C+morphometric%5C+analysis.%5C+The%5C+results%5C+of%5C+PCA%5C+did%5C+not%5C+support%5C+six%5C+taxa%5C+for%5C+it%5C+emerged%5C+considerable%5C+morphological%5C+overlap.%5C+P.%5C+rex%5C+var.%5C+rockii%5C+was%5C+promoted%5C+to%5C+subspecies%5C+level%5C+for%5C+its%5C+prominent%5C+performance%5C+in%5C+PCA.%5C+Three%5C+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专题：昆明植物所硕博研究生毕业学位论文
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唇形科叶绿体系统发育基因组学研究 ——兼论假野芝麻属的系统学位置
学位论文
: 中国科学院大学, 2022
作者:
赵飞
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唇形科，野芝麻亚科，假野芝麻属，族间关系，系统发育基因组学
Lamiaceae, Lamioideae, Paralamium, tribe relationships, phylogenomic
桔梗亚科的分子系统发育和生物地理学研究 -兼论细胞器基因组编码区的替代速率模式与机制
学位论文
: 中国科学院大学, 2022
作者:
李春姣
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桔梗亚科，浅层测序技术，系统发育基因组学，核糖体 DNA，细胞 器基因组，生物地理学，编码区，替代速率，突变速率
Campanuloideae, genome skimming, phylogenomics, nuclear ribosomal DNA, organelle genome, biogeography, coding region, substitution rate, mutation rate
虎耳草目木本分支叶绿体系统发育基因组学研究
学位论文
: 中国科学院大学, 2022
作者:
王淑颖
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蕈树科
Altingiaceae, Hamamelidaceae, Cercidiphyllaceae, Daphniphyllaceae, Phylogenomics
金缕梅科
连香树科
虎皮楠科
系统发育
落叶阔叶树种维持高光效的细胞结构与生理调控机制
学位论文
: 中国科学院大学, 2022
作者:
孙虎
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阔叶木本植物，光合作用，叶肉导度，叶肉导度限制，叶片解剖
Broad-leaved Tree Species, Photosynthesis, Mesophyll Conductance, Mesophyll Conductance Limitation, Leaf Anatomy
云南被子植物菊类分支的演化历史研究
学位论文
: 中国科学院大学, 2022
作者:
周韩洁
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物种丰富度，系统发育多样性，系统发育结构，演化历史，菊类分支
Species richness, Phylogenetic diversity, Phylogenetic structure, Evolutionary history, Asterids
报春花属植物基因组大小的检测与分析
学位论文
: 中国科学院大学, 2022
作者:
王怡心
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报春花属，基因组大小变异，系统发育信号，环境因子，重复DNA，交配系统
Primula, Genome size variation, Phylogenetic signal, Environmental variables, Repetitive DNA, Mating system
世界紫堇属（罂粟科）的分子系统学与生物地理学研究
学位论文
: 中国科学院大学, 2022
作者:
陈俊通
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紫堇亚科，紫堇属，系统发育，生物地理，组级新分类系统
Fumarioideae, Corydalis, Phylogeny, Biogeography, New classification
高山大黄属“温室植物”基因组的组装与注释
学位论文
: 中国科学院大学, 2022
作者:
匡田辉
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高山，温室植物，基因组，组装，注释
Alpine, Greenhouse-Plant, Genome, Assembly, Annotation
基于牛角瓜基因组解析其种子纤维发育和镉胁迫响应的机理
学位论文
: 中国科学院大学, 2022
作者:
杨景雅
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牛角瓜，基因组，比较基因组，纤维发育，镉胁迫，分子机制
Calotropis, Genomics, Comparative genome, Fiber development, Cadmium stress, Molecular mechanism.
迎阳报春复合群遗传标记开发和应用
学位论文
: 中国科学院大学, 2022
作者:
曾志华
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异型花柱
Heterostyly
遗传标记开发
Genetic marker development
交配系统
Mating system
表型自交综合征
Phenotypic selfing syndrome
遗传自交综合征
Genetic selfing syndrome
