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Ascopolyporus tibetensis (Cordycipitaceae, Hypocreales): a new species from Tibet, China 期刊论文
PHYTOTAXA, 2023, 卷号: 592, 期号: 2, 页码: 88-98
作者:  Yu,Feng-Ming;  Wei,De-Ping;  Zhao,Qi;  Tang,Song-Min;  Luangharn,Thatsanee
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ascopolyporus-like fungi  epiphyte  entomopathogenic fungi  phylogenetic analysis  PHYLOGENY  ASCOMYCOTA  MORPHOLOGY  CORDYCEPS  TREES  FUNGI  GENUS  
Differences in pseudogene evolution contributed to the contrasting flavors of turnip and Chiifu, two Brassica rapa subspecies 期刊论文
PLANT COMMUNICATIONS, 2023, 卷号: 4, 期号: 1, 页码: 100427
作者:  Yin,Xin;  Yang,Danni;  Zhao,Youjie;  Yang,Xingyu;  Zhou,Zhili;  Sun,Xudong;  Kong,Xiangxiang;  Li,Xiong;  Wang,Guangyan;  Duan,Yuanwen;  Yang,Yunqiang;  Yang,Yongping
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turnip genome  comparative genomics  pseudogene evolution  GSL biosynthesis  flavor  Brassicaceae lineage -specific polyploidization events (whole  WHOLE-GENOME TRIPLICATION  PHYLOGENETIC ANALYSIS  GLUCOSINOLATE CONTENT  ARABIDOPSIS  IDENTIFICATION  OLERACEA  EXPRESSION  SEQUENCE  ORIGIN  DIVERSIFICATION  
High-quality Cymbidium mannii genome and multifaceted regulation of crassulacean acid metabolism in epiphytes 期刊论文
PLANT COMMUNICATIONS, 2023, 卷号: 4, 期号: 5, 页码: 100564
作者:  Fan,Weishu;  He,Zheng-Shan;  Zhe,Mengqing;  Feng,Jing-Qiu;  Zhang,Le;  Huang,Yiwei;  Liu,Fang;  Huang,Jia-Lin;  Ya,Ji-Dong;  Zhang,Shi-Bao;  Yang,Jun-Bo;  Zhu,Andan;  Li,De-Zhu
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epiphytes  CAM photosynthesis  multi-omics  phase shifts  rhythmic metabolites  MASS-SPECTROMETRY  PHYLOGENETIC ANALYSIS  WIDE PREDICTION  EVOLUTION  CAM  SEQUENCE  ANNOTATION  ALIGNMENT  PATHWAYS  ORCHIDS  
Dispersal modes affect Rhamnaceae diversification rates in a differentiated manner 期刊论文
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2023, 卷号: 290, 期号: 2011, 页码: 20231926
作者:  Chen,Yong-Sheng;  Muellner-Riehl,Alexandra N.;  Yang,Yi;  Liu,Jian;  Dimitrov,Dimitar;  Luo,Ao;  Luo,Yuan;  Sun,Hang;  Wang,Zhi-Heng
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dispersal mode  diversification rate  extinction  Rhamnaceae  speciation  TRAIT-DEPENDENT SPECIATION  LONG-DISTANCE DISPERSAL  SEED DISPERSAL  HISTORICAL BIOGEOGRAPHY  PHYLOGENETIC ANALYSIS  NICHE EVOLUTION  FRUIT EVOLUTION  POMADERREAE  SHIFTS  GENUS  
Continuous genetic adaptation to high elevations of alpine bamboos in the Hengduan Mountains, Southwest China 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023
作者:  Luo,Li-Ying;  Jin,Gui-Hua;  Ma,Peng-Fei;  Li,De-Zhu
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alpine bamboos  continuum evolution  Hengduan Mountains  high-elevation adaptation  transcriptome  HIGH-ALTITUDE ADAPTATION  PHYLOGENETIC ANALYSIS  EVOLUTION  DUPLICATIONS  GENERATION  POLYPLOIDY  SELECTION  
Splitting one species into 22: an unusual tripling of molecular, morphological, and geographical differentiation in the fern family Didymochlaenaceae (Polypodiales) 期刊论文
CLADISTICS, 2023, 卷号: 39, 期号: 4, 页码: 273-292
作者:  Shang,Hui;  Xue,Zhi-Qing;  Liang,Zhen-Long;  Kessler,Michael;  Pollawatn,Rossarin;  Lu,Ngan Thi;  Gu,Yu-Feng;  Fan,Xue-Ping;  Tan,Yun-Hong;  Zhang,Liang;  Zhou,Xin-Mao;  Wan,Xia;  Zhang,Li-Bing
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PHYLOGENETIC ANALYSIS  DEEP RELATIONSHIPS  RAPID RADIATION  EVOLUTION  GENUS  CLASSIFICATION  BIOGEOGRAPHY  HISTORY  DIVERSIFICATION  PARSIMONY  
Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits 期刊论文
NATURE GENETICS, 2023
作者:  Huang,Yue;  He,Jiaxian;  Xu,Yuantao;  Zheng,Weikang;  Wang,Shaohua;  Chen,Peng;  Zeng,Bin;  Yang,Shuizhi;  Jiang,Xiaolin;  Liu,Zishuang;  Wang,Lun;  Wang,Xia;  Liu,Shengjun;  Lu,Zhihao;  Liu,Ziang;  Yu,Huiwen;  Yue,Jianqiang;  Gao,Junyan;  Zhou,Xianyan;  Long,Chunrui;  Zeng,Xiuli;  Guo,Yong-Jie;  Zhang,Wen-Fu;  Xie,Zongzhou;  Li,Chunlong;  Ma,Zhaocheng;  Jiao,Wenbiao;  Zhang,Fei;  Larkin,Robert M.;  Krueger,Robert R.;  Smith,Malcolm W.;  Ming,Ray;  Deng,Xiuxin;  Xu,Qiang
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PHYLOGENETIC ANALYSIS  VACUOLAR PH  GENOME  RUTACEAE  ACCURATE  ORIGIN  TOOL  CLASSIFICATION  PROGRAM  RETROTRANSPOSONS  
Multi-omics analysis reveals the evolutionary origin of diterpenoid alkaloid biosynthesis pathways in Aconitum 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2023, 卷号: 65, 期号: 10, 页码: 2320-2335
作者:  Zhao,Dake;  Zhang,Ya;  Ren,Huanxing;  Shi,Yana;  Dong,Ding;  Li,Zonghang;  Cui,Guanghong;  Shen,Yong;  Mou,Zongmin;  Kennelly,Edward J.;  Huang,Luqi;  Ruan,Jue;  Chen,Suiyun;  Yu,Diqiu;  Cun,Yupeng
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Aconitum vilmorinianum  acute toxicity  biosynthetic pathway  diterpenoid alkaloid  evolutionary origin  genome assembly  PHYLOGENETIC ANALYSIS  SUPPLEMENT TREMBL  CANDIDATE GENES  R PACKAGE  TOOL  TRANSCRIPTOME  IDENTIFICATION  RANUNCULACEAE  PREDICTION  DIVERSITY  
Genomic convergence underlying high-altitude adaptation in alpine plants 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2023
作者:  Zhang,Xu;  Kuang,Tianhui;  Dong,Wenlin;  Qian,Zhihao;  Zhang,Huajie;  Landis,Jacob B. B.;  Feng,Tao;  Li,Lijuan;  Sun,Yanxia;  Huang,Jinling;  Deng,Tao;  Wang,Hengchang;  Sun,Hang
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adaptation  alpine plants  evolutionary rates  genomic convergence  greenhouse morphology  high altitude  PHYLOGENETIC ANALYSIS  ARABIDOPSIS  EVOLUTION  PROTEIN  GENE  ALIGNMENT  PROGRAM  FAMILY  TOOL  BIOSYNTHESIS  
Phylotranscriptomic analyses reveal deep gene tree discordance in Camellia (Theaceae) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2023, 卷号: 188, 页码: 107912
作者:  Zhang,Qiong;  Folk,Ryan A.;  Mo,Zhi-Qiong;  Ye,Hang;  Zhang,Zhao-Yuan;  Peng,Hua;  Zhao,Jian-Li;  Yang,Shi-Xiong;  Yu,Xiang-Qin
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Camellia  Gene tree discordance  Transcriptome  Rapid diversification  Selective pressure  RNA-SEQ DATA  PHYLOGENETIC ANALYSIS  NUCLEAR GENES  SEQUENCE  EVOLUTION  RESOLUTION  HISTORY  INFERENCE  ALGORITHM  SELECTION