Chromosome level genome assembly of endangered medicinal plant Anisodus tanguticus

doi:10.1038/s41597-024-03007-7

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	Chromosome level genome assembly of endangered medicinal plant Anisodus tanguticus
	Song, Yongli; Huang, Jian-Ping; Wang, Yong-Jiang; Huang, Sheng-Xiong
	2024
发表期刊	SCIENTIFIC DATA
卷号	11 期号:1 页码:161
摘要	Anisodus tanguticus is a medicinal herb that belongs to the Anisodus genus of the Solanaceae family. This endangered herb is mainly distributed in Qinghai-Tibet Plateau. In this study, we combined the Illumina short-read, Nanopore long-read and high-throughput chromosome conformation capture (Hi-C) sequencing technologies to de novo assemble the A. tanguticus genome. A high-quality chromosomal-level genome assembly was obtained with a genome size of 1.26 Gb and a contig N50 of 25.07 Mb. Of the draft genome sequences, 97.47% were anchored to 24 pseudochromosomes with a scaffold N50 of 51.28 Mb. In addition, 842.14 Mb of transposable elements occupying 66.70% of the genome assembly were identified and 44,252 protein-coding genes were predicted. The genome assembly of A. tanguticus will provide genetic repertoire to understand the adaptation strategy of Anisodus species in the plateau, which will further promote the conservation of endangered A. tanguticus resources.
DOI	10.1038/s41597-024-03007-7
WOS记录号	WOS:001156562600004
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/75990
专题	中国科学院昆明植物研究所
推荐引用方式 GB/T 7714	Song, Yongli,Huang, Jian-Ping,Wang, Yong-Jiang,et al. Chromosome level genome assembly of endangered medicinal plant Anisodus tanguticus[J]. SCIENTIFIC DATA,2024,11(1):161.
APA	Song, Yongli,Huang, Jian-Ping,Wang, Yong-Jiang,&Huang, Sheng-Xiong.(2024).Chromosome level genome assembly of endangered medicinal plant Anisodus tanguticus.SCIENTIFIC DATA,11(1),161.
MLA	Song, Yongli,et al."Chromosome level genome assembly of endangered medicinal plant Anisodus tanguticus".SCIENTIFIC DATA 11.1(2024):161.

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