Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub

doi:10.1038/s41597-023-02171-6

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	Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub
	Zhao,Shi-Wei; Guo,Jing-Fang; Kong,Lei; Nie,Shuai; Yan,Xue-Mei; Shi,Tian-Le; Tian,Xue-Chan; Ma,Hai-Yao; Bao,Yu-Tao; Li,Zhi-Chao; Chen,Zhao-Yang; Zhang,Ren-Gang; Ma,Yong-Peng; El-Kassaby,Yousry A.; Porth,Ilga; Zhao,Wei; Mao,Jian-Feng
	2023
发表期刊	SCIENTIFIC DATA
ISSN	2052-4463
卷号	10 期号:1 页码:259
摘要	Coriaria nepalensis Wall. (Coriariaceae) is a nitrogen-fixing shrub which forms root nodules with the actinomycete Frankia. Oils and extracts of C. nepalensis have been reported to be bacteriostatic and insecticidal, and C. nepalensis bark provides a valuable tannin resource. Here, by combining PacBio HiFi sequencing and Hi-C scaffolding techniques, we generated a haplotype-resolved chromosome-scale genome assembly for C. nepalensis. This genome assembly is approximately 620 Mb in size with a contig N50 of 11 Mb, with 99.9% of the total assembled sequences anchored to 40 pseudochromosomes. We predicted 60,862 protein-coding genes of which 99.5% were annotated from databases. We further identified 939 tRNAs, 7,297 rRNAs, and 982 ncRNAs. The chromosome-scale genome of C. nepalensis is expected to be a significant resource for understanding the genetic basis of root nodulation with Frankia, toxicity, and tannin biosynthesis.
关键词	NUCLEOTIDE-SEQUENCES ESSENTIAL OIL ROOT-NODULES ANNOTATION TRANSCRIPTOME PATTERNS PROVIDES PROGRAM SYSTEM GROWTH
学科领域	Science & Technology - Other Topics
DOI	10.1038/s41597-023-02171-6
WOS记录号	WOS:000983082000002
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/74872
专题	中国科学院昆明植物研究所
推荐引用方式 GB/T 7714	Zhao,Shi-Wei,Guo,Jing-Fang,Kong,Lei,et al. Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub[J]. SCIENTIFIC DATA,2023,10(1):259.
APA	Zhao,Shi-Wei.,Guo,Jing-Fang.,Kong,Lei.,Nie,Shuai.,Yan,Xue-Mei.,...&Mao,Jian-Feng.(2023).Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub.SCIENTIFIC DATA,10(1),259.
MLA	Zhao,Shi-Wei,et al."Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub".SCIENTIFIC DATA 10.1(2023):259.

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