Knowledge Management System of Kunming Institute of Botany,CAS
| Draft genome of the herbaceous bamboo Raddia distichophylla | |
Li,Wei; Shi,Cong; Li,Kui; Zhang,Qun-Jie; Tong,Yan; Zhang,Yun; Wang,Jun; Clark,Lynn; Gao,Li-Zhi
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| 2021 | |
| Source Publication | G3-GENES GENOMES GENETICS
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| ISSN | 2160-1836 |
| Volume | 11Issue:2Pages:jkaa049 |
| Abstract | Bamboos are important nontimber forest plants widely distributed in the tropical and subtropical regions of Asia, Africa, America, and Pacific islands. They comprise the Bambusoideae in the grass family (Poaceae), including approximately 1700 described species in 127 genera. In spite of the widespread uses of bamboo for food, construction, and bioenergy, the gene repertoire of bamboo still remains largely unexplored. Raddia distichophylla (Schrad. ex Nees) Chase, belonging to the tribe Olyreae (Bambusoideae, Poaceae), is a diploid herbaceous bamboo with only slightly lignified stems. In this study, we report a draft genome assembly of the similar to 589 Mb whole-genome sequence of R. distichophylla with a contig N50 length of 86.36 Kb. Repeat sequences account for similar to 49.08% of the genome assembly, of which LTR retrotransposons occupy similar to 35.99% of the whole genome. A total of 30,763 protein-coding genes were annotated in the R. distichophylla genome with an average transcript size of 2887 bp. Access to this herbaceous bamboo genome sequence will provide novel insights into biochemistry, molecular marker-assisted breeding programs, and germplasm conservation for bamboo species worldwide. |
| Keyword | bamboos Raddia distichophylla whole-genome sequencing DE-NOVO IDENTIFICATION SSR-MARKERS SEQUENCE RNA ALIGNMENT POACEAE ANNOTATION PROGRAM PROTEIN PLANTS |
| DOI | 10.1093/g3journal/jkaa049 |
| WOS ID | WOS:000757529900011 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.kib.ac.cn/handle/151853/73686 |
| Collection | 中国科学院昆明植物研究所 |
| Affiliation | 1.South China Agr Univ, Inst Genom & Bioinformat, Guangzhou 510642, Peoples R China 2.Chinese Acad Sci, Plant Germplasm & Genom Ctr, Kunming Inst Bot, Germplasm Bank Wild Species Southwestern China, Kunming 650204, Yunnan, Peoples R China 3.Southwest China Forestry Univ, Inst Sustainable Dev, Kunming 650224, Yunnan, Peoples R China 4.Iowa State Univ, Dept Ecol Evolut & Organismal Biol, Ames, IA 50011 USA |
| Recommended Citation GB/T 7714 | Li,Wei,Shi,Cong,Li,Kui,et al. Draft genome of the herbaceous bamboo Raddia distichophylla[J]. G3-GENES GENOMES GENETICS,2021,11(2):jkaa049. |
| APA | Li,Wei.,Shi,Cong.,Li,Kui.,Zhang,Qun-Jie.,Tong,Yan.,...&Gao,Li-Zhi.(2021).Draft genome of the herbaceous bamboo Raddia distichophylla.G3-GENES GENOMES GENETICS,11(2),jkaa049. |
| MLA | Li,Wei,et al."Draft genome of the herbaceous bamboo Raddia distichophylla".G3-GENES GENOMES GENETICS 11.2(2021):jkaa049. |
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