Draft genome of the herbaceous bamboo Raddia distichophylla

doi:10.1093/g3journal/jkaa049

KIB OpenIR

	Draft genome of the herbaceous bamboo Raddia distichophylla
	Li,Wei ; Shi,Cong ; Li,Kui ; Zhang,Qun-Jie ; Tong,Yan ; Zhang,Yun ; Wang,Jun ; Clark,Lynn ; Gao,Li-Zhi
	2021
发表期刊	G3-GENES GENOMES GENETICS
ISSN	2160-1836
卷号	11 期号:2 页码:jkaa049
摘要	Bamboos are important nontimber forest plants widely distributed in the tropical and subtropical regions of Asia, Africa, America, and Pacific islands. They comprise the Bambusoideae in the grass family (Poaceae), including approximately 1700 described species in 127 genera. In spite of the widespread uses of bamboo for food, construction, and bioenergy, the gene repertoire of bamboo still remains largely unexplored. Raddia distichophylla (Schrad. ex Nees) Chase, belonging to the tribe Olyreae (Bambusoideae, Poaceae), is a diploid herbaceous bamboo with only slightly lignified stems. In this study, we report a draft genome assembly of the similar to 589 Mb whole-genome sequence of R. distichophylla with a contig N50 length of 86.36 Kb. Repeat sequences account for similar to 49.08% of the genome assembly, of which LTR retrotransposons occupy similar to 35.99% of the whole genome. A total of 30,763 protein-coding genes were annotated in the R. distichophylla genome with an average transcript size of 2887 bp. Access to this herbaceous bamboo genome sequence will provide novel insights into biochemistry, molecular marker-assisted breeding programs, and germplasm conservation for bamboo species worldwide.
关键词	bamboos Raddia distichophylla whole-genome sequencing DE-NOVO IDENTIFICATION SSR-MARKERS SEQUENCE RNA ALIGNMENT POACEAE ANNOTATION PROGRAM PROTEIN PLANTS
DOI	10.1093/g3journal/jkaa049
WOS记录号	WOS:000757529900011
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/73686
专题	中国科学院昆明植物研究所
作者单位	1.South China Agr Univ, Inst Genom & Bioinformat, Guangzhou 510642, Peoples R China 2.Chinese Acad Sci, Plant Germplasm & Genom Ctr, Kunming Inst Bot, Germplasm Bank Wild Species Southwestern China, Kunming 650204, Yunnan, Peoples R China 3.Southwest China Forestry Univ, Inst Sustainable Dev, Kunming 650224, Yunnan, Peoples R China 4.Iowa State Univ, Dept Ecol Evolut & Organismal Biol, Ames, IA 50011 USA
推荐引用方式 GB/T 7714	Li,Wei,Shi,Cong,Li,Kui,et al. Draft genome of the herbaceous bamboo Raddia distichophylla[J]. G3-GENES GENOMES GENETICS,2021,11(2):jkaa049.
APA	Li,Wei.,Shi,Cong.,Li,Kui.,Zhang,Qun-Jie.,Tong,Yan.,...&Gao,Li-Zhi.(2021).Draft genome of the herbaceous bamboo Raddia distichophylla.G3-GENES GENOMES GENETICS,11(2),jkaa049.
MLA	Li,Wei,et al."Draft genome of the herbaceous bamboo Raddia distichophylla".G3-GENES GENOMES GENETICS 11.2(2021):jkaa049.