Phylogenetic Analysis Based on Chloroplast and Nuclear DNA Sequences and a Revised Infrageneric Classification

doi:10.18942/apg.202107

KIB OpenIR

	Phylogenetic Analysis Based on Chloroplast and Nuclear DNA Sequences and a Revised Infrageneric Classification
	Watanabe,Seita T.; Hayashi,Kazuhiko ; Arakawa,Katsuro ; Fuse,Shizuka ; Nagamasu,Hidetoshi ; Ikeda,Hiroshi ; Kuyama,Atsushi ; Suksathan,Piyakaset ; Poopath,Manop ; Pooma,Rachun ; Yang,Yong-Ping ; Tamura,Minoru N.
	2021
发表期刊	ACTA PHYTOTAXONOMICA ET GEOBOTANICA
ISSN	1346-7565
卷号	72 期号:3 页码:179-204
摘要	Based on molecular phylogenetic evidence, phylogenetic analyses of both cpDNA and nrDNA sequences based on 76 (cp) and 77 (nr) samples representing 64 species, two subspecies, and three (cp) and two (nr) varieties of Lilium and six (cp) and five (nr) samples from Cardiocrinum, Fritillaria, and Notholirion as outgroups were used to better understand relationships within Lilium and to revise its infrageneric classification. The same individuals were used for both cpDNA and nrDNA analyses to avoid confusion caused by genetic polymorphism within a species. Nine thousand eight hundred thirty seven bp from 10 cpDNA regions and 1069 bp from the nuclear (ITS + ETS) regions were analyzed. The same twelve clades were formed in Lilium in both the chloroplast and nuclear trees (one clade of the former tree and one clade of the latter tree were not strictly formed because of low resolution). In light of the cpDNA and nrDNA trees obtained, 13 morphological characters, including a pair of marginal ridges along a central groove on the adaxial surface of the tepals were examined with attention given for the first time to the use of this character as having diagnostic value. The morphological evidence supported the twelve clades. Based on molecular and morphological evidence, a revised infrageneric classification of Lilium recognizing twelve clades as twelve sections is proposed.
关键词	monocotyledons new infrageneric classification phylog-eny tepal morphology MOLECULAR PHYLOGENY NONCODING REGIONS UNIVERSAL PRIMERS LILIUM SPACER LILIACEAE AMPLIFICATION NOMOCHARIS DISPERSAL LILIALES
DOI	10.18942/apg.202107
WOS记录号	WOS:000729646600002
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/73283
专题	中国科学院昆明植物研究所
作者单位	1.[Watanabe, Seita T.; Fuse, Shizuka; Tamura, Minoru N.] Kyoto Univ, Grad Sch Sci, Dept Bot, Sakyo Ku, Kitashirakawa Oiwake Cho, Kyoto 6068502, Japan 2.Osaka Gakuin Univ, 2-36-1 Kishibe Minami, Suita, Osaka 5648511, Japan 3.Garden Lily Farm, Nakafurano, Hokkaido, Japan 4.Kyoto Univ, Kyoto Univ Museum, Sakyo Ku, Yoshida Honmachi, Kyoto 6068501, Japan 5.Univ Tokyo, Univ Museum, Bunkyo Ku, 7-3-1 Hongo, Tokyo 1130033, Japan 6.Sakuya Konohana Kan, Tsurumi Ku, 2-163 Ryokuchi Kohen, Osaka 5380036, Japan 7.Queen Sirikit Bot Garden, POB 7, Chiang Mai 50180, Thailand 8.Forest Herbarium, Dept Natl Pk Wildlife & Plant Conservat, 61 Phahonyothin Rd, Bangkok 10900, Thailand 9.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog East Asia, 132 Lanhei Rd, Kunming 650201, Yunnan, Peoples R China
推荐引用方式 GB/T 7714	Watanabe,Seita T.,Hayashi,Kazuhiko,Arakawa,Katsuro,et al. Phylogenetic Analysis Based on Chloroplast and Nuclear DNA Sequences and a Revised Infrageneric Classification[J]. ACTA PHYTOTAXONOMICA ET GEOBOTANICA,2021,72(3):179-204.
APA	Watanabe,Seita T..,Hayashi,Kazuhiko.,Arakawa,Katsuro.,Fuse,Shizuka.,Nagamasu,Hidetoshi.,...&Tamura,Minoru N..(2021).Phylogenetic Analysis Based on Chloroplast and Nuclear DNA Sequences and a Revised Infrageneric Classification.ACTA PHYTOTAXONOMICA ET GEOBOTANICA,72(3),179-204.
MLA	Watanabe,Seita T.,et al."Phylogenetic Analysis Based on Chloroplast and Nuclear DNA Sequences and a Revised Infrageneric Classification".ACTA PHYTOTAXONOMICA ET GEOBOTANICA 72.3(2021):179-204.