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Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica
Zhang,Fen; Li,Wei; Gao,Cheng-wen; Zhang,Dan; Gao,Li-zhi
2019
Source PublicationSCIENTIFIC DATA
Volume6Pages:209
AbstractTea is the most popular non-alcoholic caffeine-containing and the oldest beverage in the world. In this study, we de novo assembled the chloroplast (cp) and mitochondrial (mt) genomes of C. sinensis var. assamica cv. Yunkang10 into a circular contig of 157,100 bp and two complete circular scaffolds (701719 bp and 177329 bp), respectively. We correspondingly annotated a total of 141 cp genes and 71 mt genes. Comparative analysis suggests repeat-rich nature of the mt genome compared to the cp genome, for example, with the characterization of 37,878 bp and 149 bp of long repeat sequences and 665 and 214 SSRs, respectively. We also detected 478 RNA-editing sites in 42 protein-coding mt genes, which are similar to 4.4-fold more than 54 RNA-editing sites detected in 21 protein-coding cp genes. The high-quality cp and mt genomes of C. sinensis var. assamica presented in this study will become an important resource for a range of genetic, functional, evolutionary and comparative genomic studies in tea tree and other Camellia species of the Theaceae family.
DOI10.1038/s41597-019-0201-8
Indexed BySCI
WOS IDWOS:000492022200002
Citation statistics
Cited Times:5[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.kib.ac.cn/handle/151853/71114
Collection中国科学院昆明植物研究所
Recommended Citation
GB/T 7714
Zhang,Fen,Li,Wei,Gao,Cheng-wen,et al. Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica[J]. SCIENTIFIC DATA,2019,6:209.
APA Zhang,Fen,Li,Wei,Gao,Cheng-wen,Zhang,Dan,&Gao,Li-zhi.(2019).Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica.SCIENTIFIC DATA,6,209.
MLA Zhang,Fen,et al."Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica".SCIENTIFIC DATA 6(2019):209.
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