Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica

doi:10.1038/s41597-019-0201-8

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	Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica
	Zhang,Fen; Li,Wei; Gao,Cheng-wen; Zhang,Dan; Gao,Li-zhi
	2019
发表期刊	SCIENTIFIC DATA
卷号	6 页码:209
摘要	Tea is the most popular non-alcoholic caffeine-containing and the oldest beverage in the world. In this study, we de novo assembled the chloroplast (cp) and mitochondrial (mt) genomes of C. sinensis var. assamica cv. Yunkang10 into a circular contig of 157,100 bp and two complete circular scaffolds (701719 bp and 177329 bp), respectively. We correspondingly annotated a total of 141 cp genes and 71 mt genes. Comparative analysis suggests repeat-rich nature of the mt genome compared to the cp genome, for example, with the characterization of 37,878 bp and 149 bp of long repeat sequences and 665 and 214 SSRs, respectively. We also detected 478 RNA-editing sites in 42 protein-coding mt genes, which are similar to 4.4-fold more than 54 RNA-editing sites detected in 21 protein-coding cp genes. The high-quality cp and mt genomes of C. sinensis var. assamica presented in this study will become an important resource for a range of genetic, functional, evolutionary and comparative genomic studies in tea tree and other Camellia species of the Theaceae family.
DOI	10.1038/s41597-019-0201-8
收录类别	SCI
WOS记录号	WOS:000492022200002
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/71114
专题	中国科学院昆明植物研究所
推荐引用方式 GB/T 7714	Zhang,Fen,Li,Wei,Gao,Cheng-wen,et al. Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica[J]. SCIENTIFIC DATA,2019,6:209.
APA	Zhang,Fen,Li,Wei,Gao,Cheng-wen,Zhang,Dan,&Gao,Li-zhi.(2019).Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica.SCIENTIFIC DATA,6,209.
MLA	Zhang,Fen,et al."Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica".SCIENTIFIC DATA 6(2019):209.

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