Characterization of the complete chloroplast genome of the relict Chinese false tupelo, Camptotheca acuminata

	Characterization of the complete chloroplast genome of the relict Chinese false tupelo, Camptotheca acuminata
	Chen, Si-Yun 2; Zhang, Xian-Zhi1
	2018-12-01
发表期刊	CONSERVATION GENETICS RESOURCES
ISSN	1877-7252
卷号	10 期号:4 页码:659-662
摘要	The Chinese false tupelo, Camptotheca acuminata, is a Tertiary relict species with dramatically fragmented and declined populations. Here we characterized the complete chloroplast (cp) genome of C. acuminata using Illumina pair-end sequencing data. The C. acuminata cp genome was 157,806 bp in length, containing a pair of inverted repeats (IRs) of 25,771 bp which separated a large single copy region (LSC) of 87,504 bp and a small single copy region (SSC) of 18,760 bp. The genome contained 134 genes, including 88 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Most of genes occurred as single-copy in the LSC or SSC, while 18 genes had two copies in the IRs. The GC content of C. acuminata cp genome is 37.8%. Phylogenomic analysis strongly supported the close relationship of C. acuminata and Davidia involucrata. This complete cp genome will be useful for further conservation genomics studies of C. acuminata.
关键词	Camptotheca acuminata Chloroplast genome Phylogenomics
收录类别	SCI
语种	英语
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/64437
专题	中国西南野生生物种质资源库
通讯作者	Zhang, Xian-Zhi
作者单位	1.Northwest A&F Univ, Coll Forestry, Yangling 712100, Shaanxi, Peoples R China 2.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China
推荐引用方式 GB/T 7714	Chen, Si-Yun,Zhang, Xian-Zhi. Characterization of the complete chloroplast genome of the relict Chinese false tupelo, Camptotheca acuminata[J]. CONSERVATION GENETICS RESOURCES,2018,10(4):659-662.
APA	Chen, Si-Yun,&Zhang, Xian-Zhi.(2018).Characterization of the complete chloroplast genome of the relict Chinese false tupelo, Camptotheca acuminata.CONSERVATION GENETICS RESOURCES,10(4),659-662.
MLA	Chen, Si-Yun,et al."Characterization of the complete chloroplast genome of the relict Chinese false tupelo, Camptotheca acuminata".CONSERVATION GENETICS RESOURCES 10.4(2018):659-662.