Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii
Zhu, Yan1; Chen, Longxian1,4; Zhang, Chengjun2; Hao, Pei3; Jing, Xinyun1; Li, Xuan1
2017
Source PublicationBMC GENOMICS
ISSN1471-2164
Volume18Pages:1042
AbstractBackground: Selaginella moellendorffii, a lycophyte, is a model plant to study the early evolution and development of vascular plants. As the first and only sequenced lycophyte to date, the genome of S. moellendorffii revealed many conserved genes and pathways, as well as specialized genes different from flowering plants. Despite the progress made, little is known about long noncoding RNAs (lncRNA) and the alternative splicing (AS) of coding genes in S. moellendorffii. Its coding gene models have not been fully validated with transcriptome data. Furthermore, it remains important to understand whether the regulatory mechanisms similar to flowering plants are used, and how they operate in a non-seed primitive vascular plant.
KeywordS. Moellendorffii Lycophyte Vascular Plant Transcriptome Long Noncoding Rna Alternative Splicing Regulation Transcription
Subject AreaBiotechnology & Applied Microbiology ; Genetics & Heredity
DOI10.1186/s12864-016-3266-1
Indexed BySCI
Language英语
WOS IDWOS:000408766800011
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Cited Times:13[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.kib.ac.cn/handle/151853/54968
Collection植物化学与西部植物资源持续利用国家重点实验室
Affiliation1.Chinese Acad Sci, Shanghai Inst Biol Sci, CAS Ctr Excellence Mol Plant Sci, Inst Plant Physiol & Ecol,Key Lab Synthet Biol, Shanghai 200032, Peoples R China
2.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species Southwest China, Kunming 650201, Yunnan, Peoples R China
3.Chinese Acad Sci, Inst Pasteur Shanghai, Key Lab Mol Virol & Immunol, Shanghai 200031, Peoples R China
4.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
Recommended Citation
GB/T 7714
Zhu, Yan,Chen, Longxian,Zhang, Chengjun,et al. Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii[J]. BMC GENOMICS,2017,18:1042.
APA Zhu, Yan,Chen, Longxian,Zhang, Chengjun,Hao, Pei,Jing, Xinyun,&Li, Xuan.(2017).Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii.BMC GENOMICS,18,1042.
MLA Zhu, Yan,et al."Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii".BMC GENOMICS 18(2017):1042.
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