A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny

doi:10.12705/661.3

	A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny
	Azani, Nasim 1; Babineau, Marielle 2,3; Bailey, C. Donovan 4; Banks, Hannah 5; Barbosa, Ariane R.6; Pinto, Rafael Barbosa 7; Boatwright, James S.8; Borges, Leonardo M.9; Brown, Gillian K.10; Bruneau, Anne 2,3; Candido, Elisa 7; Cardoso, Domingos 11; Chung, Kuo-Fang 12; Clark, Ruth P.5; Conceicao, Adilva de S.1,13; Crisp, Michael 14; Cubas, Paloma 15; Delgado-Salinas, Alfonso 1,16; Dexter, Kyle G.17; Doyle, Jeff J.18; Duminil, Jerome 19; Egan, Ashley N.20; de la Estrella, Manuel 5; Falcao, Marcus J.21; Filatov, Dmitry A.22; Fortuna-Perez, Ana Paula 23; Fortunato, Renee H.24,25; Gagnon, Edeline 2,3; Gasson, Peter 5; Rando, Juliana Gastaldello 26; Goulart de Azevedo Tozzi, Ana Maria 7; Gunn, Bee 14; Harris, David 27; Haston, Elspeth 27; Hawkins, Julie A.28; Herendeen, Patrick S.29; Hughes, Colin E.30; Iganci, Joao R. V.31; Javadi, Firouzeh 32; Kanu, Sheku Alfred 33; Kazempour-Osaloo, Shahrokh 34; Kite, Geoffrey C.5; Klitgaard, Bente B.5; Kochanovski, Fabio J.7; Koenen, Erik J. M.30; Kovar, Lynsey 4; Lavin, Matt 35; le Roux, Marianne 36,37; Lewis, Gwilym P.5; de Lima, Haroldo C.21; Lopez-Roberts, Maria Cristina 6; Mackinder, Barbara 27; Maia, Vitor Hugo 38; Malecot, Valery 39; Mansano, Vidal F.21; Marazzi, Brigitte 40; Mattapha, Sawai 28; Miller, Joseph T.41; Mitsuyuki, Chika 42; Moura, Tania 43; Murphy, Daniel J.44; Nageswara-Rao, Madhugiri 4; Nevado, Bruno 22; Neves, Danilo 5; Ojeda, Dario I.19; Pennington, R. Toby 27; Prado, Darirn E.45; Prenner, Gerhard 5; de Queiroz, Luciano Paganucci 6; Ramos, Gustavo 11; Ranzato Filardi, Fabiana L.21; Ribeiro, Petala G.6; Rico-Arce, Maria de Lourdes 5; Sanderson, Michael J.46; Santos-Silva, Juliana 13; Sao-Mateus, Wallace M. B.47; Silva, Marcos J. S.48; Simon, Marcelo F.49; Sinou, Carole 30; Snak, Cristiane 6; de Souza, Elvia R.13; Sprent, Janet 50; Steele, Kelly P.51; Steier, Julia E.52; Steeves, Royce 2,3; Stirton, Charles H.53; Tagane, Shuichiro 42; Torke, Benjamin M.54; Toyama, Hironori 42; da Cruz, Daiane Trabuco 6; Vatanparast, Mohammad 20; Wieringa, Jan J.55; Wink, Michael 56; Wojciechowski, Martin F.52; Yahara, Tetsukazu 42; Yi, Tingshuang57 ; Zimmerman, Erin 2,3
	2017-02-01
发表期刊	TAXON
卷号	66 期号:1 页码:44-77
摘要	The classification of the legume family proposed here addresses the long-known non-monophyly of the traditionally recognised subfamily Caesalpinioideae, by recognising six robustly supported monophyletic subfamilies. This new classification uses as its framework the most comprehensive phylogenetic analyses of legumes to date, based on plastid matK gene sequences, and including near-complete sampling of genera (698 of the currently recognised 765 genera) and ca. 20% (3696) of known species. The matK gene region has been the most widely sequenced across the legumes, and in most legume lineages, this gene region is sufficiently variable to yield well-supported clades. This analysis resolves the same major clades as in other phylogenies of whole plastid and nuclear gene sets (with much sparser taxon sampling). Our analysis improves upon previous studies that have used large phylogenies of the Leguminosae for addressing evolutionary questions, because it maximises generic sampling and provides a phylogenetic tree that is based on a fully curated set of sequences that are vouchered and taxonomically validated. The phylogenetic trees obtained and the underlying data are available to browse and download, facilitating subsequent analyses that require evolutionary trees. Here we propose a new community-endorsed classification of the family that reflects the phylogenetic structure that is consistently resolved and recognises six subfamilies in Leguminosae: a recircumscribed Caesalpinioideae DC., Cercidoideae Legume Phylogeny Working Group (stat. nov.), Detarioideae Burmeist., Dialioideae Legume Phylogeny Working Group (stat. nov.), Duparquetioideae Legume Phylogeny Working Group (stat. nov.), and Papilionoideae DC. The traditionally recognised subfamily Mimosoideae is a distinct clade nested within the recircumscribed Caesalpinioideae and is referred to informally as the mimosoid clade pending a forthcoming formal tribal and/or clade-based classification of the new Caesalpinioideae. We provide a key for subfamily identification, descriptions with diagnostic charactertistics for the subfamilies, figures illustrating their floral and fruit diversity, and lists of genera by subfamily. This new classification of Leguminosae represents a consensus view of the international legume systematics community; it invokes both compromise and practicality of use.
关键词	Caesalpinioideae Cercidoideae Detarioideae Dialioideae Duparquetioideae Mimosoid Clade Papilionoideae Plastid Matk Phylogeny
DOI	10.12705/661.3
收录类别	SCI
语种	英语
WOS记录号	WOS:000397389100003
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/33822
专题	中国西南野生生物种质资源库
作者单位	1.Univ Tehran, Dept Plant Sci, Tehran, Iran 2.Univ Montreal, Inst Rech & Biol Veg, Montreal, PQ, Canada 3.Univ Montreal, Dept Sci Biol, Montreal, PQ, Canada 4.New Mexico State Univ, Dept Biol, Las Cruces, NM USA 5.Royal Bot Gardens Kew, Richmond, Surrey, England 6.Univ Estadual Feira de Santana, Dept Ciencias Biol, Feira De Santana, Brazil 7.Univ Estadual Campinas, Dept Biol Vegetal, Campinas, SP, Brazil 8.Univ Western Cape, Dept Biodivers & Conservat Biol, Cape Town, South Africa 9.Univ Fed Sao Carlos, Dept Bot, Sao Carlos, SP, Brazil 10.Univ Melbourne, Australia & Queensland Herbarium, Sch Biosci, Toowong, Australia 11.Univ Fed Bahia, Inst Biol, Salvador, BA, Brazil 12.Natl Taiwan Univ, Sch Forestry & Resource Conservat, Taipei, Taiwan 13.Univ Estado Bahia, Dept Educ, Campus VIII, Paulo Afonso, Brazil 14.Australian Natl Univ, Res Sch Biol, Canberra, ACT, Australia 15.Univ Complutense, Dept Biol Veg 2, Madrid, Spain 16.Univ Nacl Autonoma Mexico, Inst Biol Botan, Mexico City, DF, Mexico 17.Univ Edinburgh, Sch GeoSci, Edinburgh, Midlothian, Scotland 18.Cornell Univ, Dept Plant Biol, Ithaca, NY USA 19.Univ Libre Bruxelles, Serv Evolut Biolog & Ecol, Brussels, Belgium 20.Natl Museum Nat Hist, Smithsonian Inst, Dept Bot, Washington, DC 20560 USA 21.Inst Pesquisas, Jardim Botan Rio De Janeiro, Rio De Janeiro, Brazil 22.Univ Oxford, Dept Plant Sci, Oxford, England 23.Univ Estadual Paulista, Dept Bot, Botucatu, SP, Brazil 24.Consejo Nacl Invest Cient & Tecn, CIRN INTA, Inst Recursos Biol, Buenos Aires, DF, Argentina 25.Univ Moron, Buenos Aires, DF, Argentina 26.Univ Fed Oeste Bahia, Ciencias Ambientais, Barreiras, Brazil 27.Royal Bot Gardens, Edinburgh, Midlothian, Scotland 28.Univ Reading, Sch Biol Sci, Reading, Berks, England 29.Chicago Bot Garden, Glencoe, IL USA 30.Univ Zurich, Dept Systemat & Evolutionary Bot, Zurich, Switzerland 31.Univ Fed Rio Grande do Sul, Dept Bot, Porto Alegre, RS, Brazil 32.Kyushu Univ, Inst Decis Sci Sustainable Soc, Fukuoka, Japan 33.Univ South Africa, Dept Agr & Anim Hlth, ZA-0001 Pretoria, South Africa 34.Tarbiat Modares Univ, Dept Plant Biol, Tehran, Iran 35.Montana State Univ, Plant Sci & Plant Pathol, Bozeman, MT USA 36.South African Natl Biodivers Inst, Silverton, South Africa 37.Univ Johannesburg, Dept Bot & Plant Biotechnol, Johannesburg, South Africa 38.Pontificia Univ Catolica Rio de Janeiro, Dept Biol, Rio De Janeiro, Brazil 39.Univ Angers, INRA, Agrocampus Ouest, Angers, France 40.Museo Cantonale Storia Nat, Lugano, Switzerland 41.Natl Sci Fdn, Off Int Sci & Engn, Arlington, VA 22230 USA 42.Kyushu Univ, Dept Biol, Fukuoka, Japan 43.Missouri Bot Garden, St Louis, MO USA 44.Royal Bot Gardens Victoria, Plant Sci & Biodivers, Melbourne, Vic, Australia 45.Univ Nacl Rosario, Fac Ciencias Agr, IICAR CONICET, Botan, Zavalla, Argentina 46.Univ Arizona, Dept Ecol & Evolutionary Biol, Tucson, AZ USA 47.Univ Fed Rio Grande do Norte, Sistemat Evolucao, Rio De Janeiro, Brazil 48.Univ Fed Goias, Inst Ciencias Biol, Dept Bot, Goiania, Go, Brazil 49.Embrapa Recursos Geneticos Biotecnol, Brasilia, DF, Brazil 50.Univ Dundee, Dept Plant Sci, Dundee, Scotland 51.Arizona State Univ Polytech, Fac Sci & Math, Mesa, AZ USA 52.Arizona State Univ, Sch Life Sci, Tempe, AZ USA 53.Univ Cape Town, Bolus Herbarium, Dept Biol Sci, Rondebosch, South Africa 54.Inst Systemat Bot, New York Bot Garden, Bronx, NY USA 55.Na Biodivers Ctr, Leiden, Netherlands 56.Heidelberg Univ, Inst Pharm & Mol Biotechnol, Heidelberg, Germany 57.Chinese Acad Sci, Kunming Inst Bot, Beijing, Peoples R China
推荐引用方式 GB/T 7714	Azani, Nasim,Babineau, Marielle,Bailey, C. Donovan,et al. A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny[J]. TAXON,2017,66(1):44-77.
APA	Azani, Nasim.,Babineau, Marielle.,Bailey, C. Donovan.,Banks, Hannah.,Barbosa, Ariane R..,...&Zimmerman, Erin.(2017).A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny.TAXON,66(1),44-77.
MLA	Azani, Nasim,et al."A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny".TAXON 66.1(2017):44-77.

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