Complete nucleotide sequence and gene arrangement of the mitochondrial genome of the crab-eating frog Fejervarya cancrivora and evolutionary implications
Ren, Zhumei2; Zhu, Bin1; Ma, Enbo2; Wen, Jun3; Tu, Tieyao4,5; Cao, Ying6,7; Hasegawa, Masami1; Zhong, Yang1,8
2009-07-15
发表期刊GENE
ISSN0378-1119
卷号441期号:1-2页码:148-155
摘要The complete nucleotide sequence of the mitochondrial (mt) genome of the crab-eating frog, Fejervarya cancrivora Gravenhorst (Amphibia: Anura: Ranidae), was determined. The mt genome is 17,843 bp long and contains 13 protein-coding (ATP6, ATP8, COI-III, ND1-6 and 4L, and Cyt b) and two ribosomal RNA (12S and 16SrRNA) genes. Although metazoan mt genomes typically encode 22 transfer RNA genes (tRNAs), the E cancrivora mtDNA contains 23 tRNAs due to the presence of an extra copy of tRNA(Met). A major noncoding region and a prominent intergenic spacer corresponding to the control region and light-strand replication origin were also found. To confirm the phylogenetic position of F cancrivora, we compared the gene arrangement with that of other anurans and performed phylogenetic analyses based on mt genomic data. The genome organization of E cancrivora mtDNA differs from that of typical vertebrates and neobatrachian frogs but is identical with that of F limnocharis, suggesting that the unique gene arrangement occurred in the common ancestor of the genus. Phylogenetic analyses supported the monophyly of the Fejervarya species used here as well as the dicroglossini clade. Although the family Ranidae as previously recognized (=Ranidae, Discoglossidae, and some other natatanuran families; sensu Frost et al., 2006) is shown as a clade in the maximum parsimony analysis, the maximum likelihood and the Bayesian analyses suggest the paraphyly of the Ranidae with respect to the families, Mantellidae and Rhacophoridae. Three-tandem duplications of gene regions followed by subsequent deletions of supernumerary genes were proposed to explain the evolution of the extra tRNA(Met) and translocation of ND5 from the original neobatrachian gene order. (C) 2008 Published by Elsevier B.V.
关键词Crab-eating Frog Fejervarya Cancrivora Mitochondrial Genome Rearrangement Phylogeny
资助信息National Natural Science Foundation [30670361]; Natural Science Foundation Shanxi Province [2007011078]; National infrastructure of Natural Resources for Science and Technology [2005DKA21403]; Shanghai Leading Academic Discipline Project [B111]; Shanghai Science and Technology Committee [07XD14025]
收录类别SCI
语种英语
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文献类型期刊论文
条目标识符http://ir.kib.ac.cn/handle/151853/3178
专题中国科学院东亚植物多样性与生物地理学重点实验室
作者单位1.Fudan Univ, Sch Life Sci, Shanghai 200433, Peoples R China
2.Shanxi Univ, Coll Life Sci & Technol, Taiyuan 030006, Peoples R China
3.Smithsonian Inst, Dept Bot, Washington, DC 20013 USA
4.Chinese Acad Sci, Key Lab Biodivers & Biogeog, Kunming Inst Bot, Kunming 650204, Yunnan, Peoples R China
5.Chinese Acad Sci, Grad Sch, Beijing 100039, Peoples R China
6.Inst Stat Math, Minato Ku, Tokyo 106, Japan
7.Grad Univ Adv Studies, Dept Biosyst Sci, Kanagawa 2400193, Japan
8.Shanghai Ctr Bioinformat Technol, Shanghai 200433, Peoples R China
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Ren, Zhumei,Zhu, Bin,Ma, Enbo,et al. Complete nucleotide sequence and gene arrangement of the mitochondrial genome of the crab-eating frog Fejervarya cancrivora and evolutionary implications[J]. GENE,2009,441(1-2):148-155.
APA Ren, Zhumei.,Zhu, Bin.,Ma, Enbo.,Wen, Jun.,Tu, Tieyao.,...&Zhong, Yang.(2009).Complete nucleotide sequence and gene arrangement of the mitochondrial genome of the crab-eating frog Fejervarya cancrivora and evolutionary implications.GENE,441(1-2),148-155.
MLA Ren, Zhumei,et al."Complete nucleotide sequence and gene arrangement of the mitochondrial genome of the crab-eating frog Fejervarya cancrivora and evolutionary implications".GENE 441.1-2(2009):148-155.
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