Complete Plastid Genome Sequencing of Four Tilia Species (Malvaceae): A Comparative Analysis and Phylogenetic Implications

doi:10.1371/journal.pone.0142705

	Complete Plastid Genome Sequencing of Four Tilia Species (Malvaceae): A Comparative Analysis and Phylogenetic Implications
	Cai, Jie; Ma, Peng-Fei; Li, Hong-Tao; Li, De-Zhu
	2015-11-13
发表期刊	PLOS ONE
卷号	10 期号:11
摘要	Tilia is an ecologically and economically important genus in the family Malvaceae. However, there is no complete plastid genome of Tilia sequenced to date, and the taxonomy of Tilia is difficult owing to frequent hybridization and polyploidization. A well-supported interspecific relationships of this genus is not available due to limited informative sites from the commonly used molecular markers. We report here the complete plastid genome sequences of four Tilia species determined by the Illumina technology. The Tilia plastid genome is 162,653 bp to 162,796 bp in length, encoding 113 unique genes and a total number of 130 genes. The gene order and organization of the Tilia plastid genome exhibits the general structure of angiosperms and is very similar to other published plastid genomes of Malvaceae. As other long-lived tree genera, the sequence divergence among the four Tilia plastid genomes is very low. And we analyzed the nucleotide substitution patterns and the evolution of insertions and deletions in the Tilia plastid genomes. Finally, we build a phylogeny of the four sampled Tilia species with high supports using plastid phylogenomics, suggesting that it is an efficient way to resolve the phylogenetic relationships of this genus.
DOI	10.1371/journal.pone.0142705
收录类别	SCI
语种	英语
WOS记录号	WOS:000367628500045
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/25445
专题	中国西南野生生物种质资源库
推荐引用方式 GB/T 7714	Cai, Jie,Ma, Peng-Fei,Li, Hong-Tao,et al. Complete Plastid Genome Sequencing of Four Tilia Species (Malvaceae): A Comparative Analysis and Phylogenetic Implications[J]. PLOS ONE,2015,10(11).
APA	Cai, Jie,Ma, Peng-Fei,Li, Hong-Tao,&Li, De-Zhu.(2015).Complete Plastid Genome Sequencing of Four Tilia Species (Malvaceae): A Comparative Analysis and Phylogenetic Implications.PLOS ONE,10(11).
MLA	Cai, Jie,et al."Complete Plastid Genome Sequencing of Four Tilia Species (Malvaceae): A Comparative Analysis and Phylogenetic Implications".PLOS ONE 10.11(2015).

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