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Characterization of chloroplast microsatellite loci from whole chloroplast genome of Camellia taliensis and their utilization for evaluating genetic diversity of Camellia reticulata (Theaceae)
Tong, Yan1,2,3; Wu, Chun-Yan2,3; Gao, Li-Zhi2
2013-10-01
发表期刊BIOCHEMICAL SYSTEMATICS AND ECOLOGY
ISSN0305-1978
卷号50页码:207-211
摘要This study characterized chloroplast microsatellite markers for Camellia reticulata, a famous ornamental and edible economic tree species only distributed in Southwestern China. Thirty-two chloroplast microsatellite markers were originally annotated in the whole chloroplast genome of Camellia taliensis, ten polymorphic microsatellite markers were tested in 96 individuals from four natural populations of C reticulata. Alleles numbered from two to four, and average value of Shannon's Information index, Nei's gene diversity, total genetic diversity, genetic diversity within populations, gene differentiation coefficient and gene flow index were 0.408, 0.225, 0.217, 0.102, 0.530 and 0.443, respectively. Our results showed high genetic differentiation and limited gene flow among the studied populations, which may be explained by recent fragmentation of the remnant populations due to human destruction and disturbance of natural habitats of the species. The identified cpSSR markers will be useful for the future studies on population genetics, conservation biology and phylogeography of C reticulata. (C) 2013 Elsevier Ltd. All rights reserved.
关键词Camellia Reticulata Theaceae Polymorphisms Population Genetics Cpssr Chloroplast Microsatellite
资助信息National Science Foundation of China [U0936603];Natural Science Foundation of Yunnan Province [2008CC016];Hundreds Oversea Talents Program of Yunnan Province;Top Talent Program of Yunnan Province [20080A009];Chinese Academy of Sciences (CAS);Kunming Institute of Botany, CAS [672705232515, 51O602511121]
收录类别SCI
语种英语
引用统计
文献类型期刊论文
条目标识符http://ir.kib.ac.cn/handle/151853/17443
专题中国西南野生生物种质资源库
作者单位1.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming 650201, Peoples R China
2.Chinese Acad Sci, Kunming Inst Bot, Plant Germplasm & Genom Ctr, Germplasm Bank Wild Species Southwest China, Kunming 650201, Peoples R China
3.Univ Chinese Acad Sci, Beijing 100039, Peoples R China
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Tong, Yan,Wu, Chun-Yan,Gao, Li-Zhi. Characterization of chloroplast microsatellite loci from whole chloroplast genome of Camellia taliensis and their utilization for evaluating genetic diversity of Camellia reticulata (Theaceae)[J]. BIOCHEMICAL SYSTEMATICS AND ECOLOGY,2013,50:207-211.
APA Tong, Yan,Wu, Chun-Yan,&Gao, Li-Zhi.(2013).Characterization of chloroplast microsatellite loci from whole chloroplast genome of Camellia taliensis and their utilization for evaluating genetic diversity of Camellia reticulata (Theaceae).BIOCHEMICAL SYSTEMATICS AND ECOLOGY,50,207-211.
MLA Tong, Yan,et al."Characterization of chloroplast microsatellite loci from whole chloroplast genome of Camellia taliensis and their utilization for evaluating genetic diversity of Camellia reticulata (Theaceae)".BIOCHEMICAL SYSTEMATICS AND ECOLOGY 50(2013):207-211.
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