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High universality of matK primers for barcoding gymnosperms
Li, Yan1,2; Gao, Lian-Ming1; Poudel, Ram C.1,3,4; Li, De-Zhu1,3; Forrest, Alan5
2011-05-01
Source PublicationJOURNAL OF SYSTEMATICS AND EVOLUTION
Volume49Issue:3Pages:169-175
AbstractDNA barcoding is a tool to provide rapid and accurate taxonomic identification using a standard DNA region. A two-marker combination of matK+rbcL was formally proposed as the core barcode for land plants by the Consortium for the Barcode of Life Plant Working Group. However, there are currently no barcoding primers for matK showing high universality in gymnosperms. We used 57 gymnosperm species representing 40 genera, 11 families and four subclasses to evaluate the universality of nine candidate matK primers and one rbcL primer in this study. Primer (1F/724R) of rbcL is proposed here as a universal primer for gymnosperms due to high universality. One of the nine candidate matK primers (Gym_F1A/Gym_R1A) is proposed as the best "universal" matK primer for gymnosperms because of high polymerase chain reaction success and routine generation of high quality bidirectional sequences. A specific matK primer for Ephedra was newly designed in this study, which performed well on the sampled species. The primers proposed here for rbcL and matK can be easily and successfully amplified for most gymnosperms.
KeywordDna Barcoding Matk Gymnosperm Primer Universality
Subject AreaPlant Sciences
DOI10.1111/j.1759-6831.2011.00128.x
Indexed BySCI
Language英语
WOS Research AreaPlant Sciences
WOS SubjectPlant Sciences
WOS IDWOS:000291236500002
Citation statistics
Cited Times:25[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.kib.ac.cn/handle/151853/11239
Collection中国西南野生生物种质资源库
Affiliation1.Chinese Acad Sci, Key Lab Biodivers & Biogeog, Kunming Inst Bot, Kunming 650204, Peoples R China
2.Yunnan Acad Agr Sci, Inst Alpine Econ Plants, Lijiang 674100, Peoples R China
3.Chinese Acad Sci, Germplasm Bank Wild Species SW China, Kunming Inst Bot, Kunming 650204, Peoples R China
4.Chinese Acad Sci, Grad Univ, Beijing 100049, Peoples R China
5.Royal Bot Garden Edinburgh, Edinburgh EH3 5LR, Midlothian, Scotland
Recommended Citation
GB/T 7714
Li, Yan,Gao, Lian-Ming,Poudel, Ram C.,et al. High universality of matK primers for barcoding gymnosperms[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2011,49(3):169-175.
APA Li, Yan,Gao, Lian-Ming,Poudel, Ram C.,Li, De-Zhu,&Forrest, Alan.(2011).High universality of matK primers for barcoding gymnosperms.JOURNAL OF SYSTEMATICS AND EVOLUTION,49(3),169-175.
MLA Li, Yan,et al."High universality of matK primers for barcoding gymnosperms".JOURNAL OF SYSTEMATICS AND EVOLUTION 49.3(2011):169-175.
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