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Testing and using complete plastomes and ribosomal DNA sequences as the next generation DNA barcodes in Panax (Araliaceae) 期刊论文
MOLECULAR ECOLOGY RESOURCES, 2019, 页码: 13
Authors:  Ji, Yunheng;  Liu, Changkun;  Yang, Zhenyan;  Yang, Lifang;  He, Zhengshan;  Wang, Hengchang;  Yang, Junbo;  Yi, Tingshuang
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next-generation DNA barcodes  Panax  plastome  ribosomal DNA  species discrimination  standard DNA barcodes  
Description of Dermea persica (Dermateaceae, Helotiales), a new asexual Ascomycete from Iran, and an updated key to Dermea species 期刊论文
PHYTOTAXA, 2018, 卷号: 367, 期号: 1, 页码: 25-37
Authors:  Mehrabi, Mehdi;  Asgari, Bita;  Wijayawardene, Nalin N.;  Hyde, Kevin D.
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Coelomycetes  Inoperculate Discomycetes  Phylogeny  Ribosomal DNA  Taxonomy  
Frequent gene flow blurred taxonomic boundaries of sections in Lilium L. (Liliaceae) 期刊论文
PLOS ONE, 2017, 卷号: 12, 期号: 8, 页码: e0183209
Authors:  Gong, Xun;  Hung, Kuo-Hsiang;  Ting, Yu-Wei;  Hsu, Tsai-Wen;  Malikova, Lenka;  Huyen Trang Tran;  Huang, Chao-Li;  Liu, Shih-Hui;  Chiang, Tzen-Yuh
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Nuclear Ribosomal Dna  Transcribed Spacer Region  Molecular Phylogeny  European Lilies  Sequence Data  Plant Dna  Evolutionary  Chloroplast  Genome  Incongruence  
Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2017, 卷号: 34, 期号: 2, 页码: 262-281
Authors:  Xiang,Yezi;  Huang,Chien-Hsun;  Hu,Yi;  Wen,Jun;  Li,Shisheng;  Yi,Tingshuang;  Chen,Hongyi;  Xiang,Jun;  Ma,Hong
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Northeastern Washington-state  Sequence Data  Molecular Phylogenetics  British-columbia  Divergence Times  Prunus Rosaceae  Ribosomal Dna  Early Eocene  Gene Data  Polyploidy  Coalescence  Fruit Evolution  Molecular Clock  Nuclear Phylogeny  Rosaceae  Genome Duplication  
Fifteen novel universal primer pairs for sequencing whole chloroplast genomes and a primer pair for nuclear ribosomal DNAs 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2016, 卷号: 54, 期号: 3, 页码: 219-227
Authors:  Zhang, Ting;  Zeng, Chun-Xia;  Yang, Jun-Bo;  Li, Hong-Tao;  Li, De-Zhu
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Angiosperm Chloroplast Genomes  Next-generation Sequencing  Nuclear Ribosomal Dna  Universal Primer Pairs  
Multigene Molecular Phylogeny and Biogeographic Diversification of the Earth Tongue Fungi in the Genera Cudonia and Spathularia (Rhytismatales, Ascomycota) 期刊论文
PLOS ONE, 2014, 卷号: 9, 期号: 8, 页码: e103457
Authors:  Ge, Zai-Wei;  Yang, Zhu L.;  Pfister, Donald H.;  Carbone, Matteo;  Bau, Tolgor;  Smith, Matthew E.;  Ge, ZW (reprint author), Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China.;  zaiweige@gmail.com;  fungi@mail.kib.ac.cn
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Eocene-oligocene Transition  Ribosomal Dna-sequences  True Morels Morchella  Historical Biogeography  Northern-hemisphere  Species Recognition  Divergence Times  Rdna Phylogeny  Evolution  China  
Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi 期刊论文
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2014, 页码: bau061
Authors:  Schoch, Conrad L.;  Robbertse, Barbara;  Robert, Vincent;  Duong Vu;  Cardinali, Gianluigi;  Irinyi, Laszlo;  Meyer, Wieland;  Nilsson, R. Henrik;  Hughes, Karen;  Miller, Andrew N.;  Kirk, Paul M.;  Abarenkov, Kessy;  Aime, M. Catherine;  Ariyawansa, Hiran A.;  Bidartondo, Martin;  Boekhout, Teun;  Buyck, Bart;  Cai, Qing;  Chen, Jie;  Crespo, Ana;  Crous, Pedro W.;  Damm, Ulrike;  De Beer, Z. Wilhelm;  Dentinger, Bryn T. M.;  Divakar, Pradeep K.;  Duenas, Margarita;  Feau, Nicolas;  Fliegerova, Katerina;  Garcia, Miguel A.;  Ge, Zai-Wei;  Griffith, GarethW.;  Groenewald, Johannes Z.;  Groenewald, Marizeth;  Grube, Martin;  Gryzenhout, Marieka;  Gueidan, Cecile;  Guo, Liangdong;  Hambleton, Sarah;  Hamelin, Richard;  Hansen, Karen;  Hofstetter, Valerie;  Hong, Seung-Beom;  Houbraken, Jos;  Hyde, Kevin D.;  Inderbitzin, Patrik;  Johnston, Peter R.;  Karunarathna, Samantha C.;  Koljalg, Urmas;  Kovacs, Gabor M.;  Kraichak, Ekaphan;  Krizsan, Krisztina;  Kurtzman, Cletus P.;  Larsson, Karl-Henrik;  Leavitt, Steven;  Letcher, Peter M.;  Liimatainen, Kare;  Liu, Jian-Kui;  Lodge, D. Jean;  Luangsa-ard, Janet Jennifer;  Lumbsch, H. Thorsten;  Maharachchikumbura, Sajeewa S. N.;  Manamgoda, Dimuthu;  Martin, Maria P.;  Minnis, Andrew M.;  Moncalvo, Jean-Marc;  Mule, Giuseppina;  Nakasone, Karen K.;  Niskanen, Tuula;  Olariaga, Ibai;  Papp, Tamas;  Petkovits, Tamas;  Pino-Bodas, Raquel;  Powell, Martha J.;  Raja, Huzefa A.;  Redecker, Dirk;  Sarmiento-Ramirez, J. M.;  Seifert, Keith A.;  Shrestha, Bhushan;  Stenroos, Soili;  Stielow, Benjamin;  Suh, Sung-Oui;  Tanaka, Kazuaki;  Tedersoo, Leho;  Teresa Telleria, M.;  Udayanga, Dhanushka;  Untereiner, Wendy A.;  Dieguez Uribeondo, Javier;  Subbarao, Krishna V.;  Vagvoelgyi, Csaba;  Visagie, Cobus;  Voigt, Kerstin;  Walker, Donald M.;  Weir, Bevan S.;  Weiss, Michael;  Wijayawardene, Nalin N.;  Wingfield, Michael J.;  Xu, J. P.;  Yang, Zhu L.;  Zhang, Ning;  Zhuang, Wen-Ying;  Federhen, Scott;  Yang, YP (reprint author), Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Div & Biogeog East Asia, Menglun Township 650201, Yunnan, Peoples R China.;  yangyp@mail.kib.ac.cn
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Internal Transcribed Spacer  Arbuscular Mycorrhizal Fungi  Ribosomal Dna  Interspecific Hybridization  Sequence Analyses  Species Complex  Identification  Evolution  Barcode  Life  
Families of Dothideomycetes 期刊论文
FUNGAL DIVERSITY, 2013, 卷号: 63, 期号: 1, 页码: 1-313
Authors:  Hyde, Kevin D.;  Jones, E. B. Gareth;  Liu, Jian-Kui;  Ariyawansa, Hiran;  Boehm, Eric;  Boonmee, Saranyaphat;  Braun, Uwe;  Chomnunti, Putarak;  Crous, Pedro W.;  Dai, Dong-Qin;  Diederich, Paul;  Dissanayake, Asha;  Doilom, Mingkhuan;  Doveri, Francesco;  Hongsanan, Singang;  Jayawardena, Ruvishika;  Lawrey, James D.;  Li, Yan-Mei;  Liu, Yong-Xiang;  Lucking, Robert;  Monkai, Jutamart;  Muggia, Lucia;  Nelsen, Matthew P.;  Pang, Ka-Lai;  Phookamsak, Rungtiwa;  Senanayake, Indunil C.;  Shearer, Carol A.;  Suetrong, Satinee;  Tanaka, Kazuaki;  Thambugala, Kasun M.;  Wijayawardene, Nalin N.;  Wikee, Saowanee;  Wu, Hai-Xia;  Zhang, Ying;  Aguirre-Hudson, Begoa;  Alias, S. Aisyah;  Aptroot, Andr;  Bahkali, Ali H.;  Bezerra, Jose L.;  Bhat, D. Jayarama;  Camporesi, Erio;  Chukeatirote, Ekachai;  Gueidan, Cecile;  Hawksworth, David L.;  Hirayama, Kazuyuki;  De Hoog, Sybren;  Kang, Ji-Chuan;  Knudsen, Kerry;  Li, Wen-Jing;  Li, Xing-Hong;  Liu, Zou-Yi;  Mapook, Ausana;  McKenzie, Eric H. C.;  Miller, Andrew N.;  Mortimer, Peter E.;  Phillips, Alan J. L.;  Raja, Huzefa A.;  Scheuer, Christian;  Schumm, Felix;  Taylor, Joanne E.;  Tian, Qing;  Tibpromma, Saowaluck;  Wanasinghe, Dhanushka N.;  Wang, Yong;  Xu, Jian-Chu;  Yacharoen, Supalak;  Yan, Ji-Ye;  Zhang, Min
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Ribosomal Dna-sequences  Morphologically Similar Genera  Foliicolous Lichenized Fungi  Intertidal Mangrove Wood  Leaf-inhabiting Fungi  Fresh-water Habitats  New-zealand Fungi  Russian Far-east  Papua-new-guinea  Sp-nov  
Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 卷号: 108, 期号: 49, 页码: 19641-19646
Li, De-Zhu; Gao, Lian-Ming; Li, Hong-Tao; Wang, Hong; Ge, Xue-Jun; Liu, Jian-Quan; Chen, Zhi-Duan; Zhou, Shi-Liang; Chen, Shi-Lin; Yang, Jun-Bo; Fu, Cheng-Xin; Zeng, Chun-Xia; Yan, Hai-Fei; Zhu, Ying-Jie; Sun, Yong-Shuai; Chen, Si-Yun; Zhao, Lei; Wang, Kun; Yang, Tuo; Duan, Guang-Wen
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Land Plants  Species Identification  Nuclear Ribosomal (Nr) Dna  Dna Barcodes  Land Plants  Species Identification  Flowering Plants  Conservation  Speciation  Its2  Evolutionary  Phylogeny  Accuracy  
Enriching plant microbiota for a metagenomic library construction 期刊论文
ENVIRONMENTAL MICROBIOLOGY, 2008, 卷号: 10, 期号: 10, 页码: 2684-2691
Authors:  Wang, Hao-Xin;  Geng, Zhao-Liang;  Zeng, Ying;  Shen, Yue-Mao
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Ribosomal-rna Sequences  Uncultured Microorganisms  Diversity  Database  Project  Genomes  Dna