×
验证码:
换一张
忘记密码？
记住我
×
登录
中文版
|
English
中国科学院昆明植物研究所知识管理系统
Knowledge Management System of Kunming Institute of Botany,CAS
登录
注册
ALL
ORCID
题名
作者
学科领域
关键词
资助项目
文献类型
出处
收录类别
出版者
发表日期
存缴日期
学科门类
学习讨论厅
图片搜索
粘贴图片网址
首页
研究单元&专题
作者
文献类型
学科分类
知识图谱
新闻&公告
研究单元&专题
中国科学院东亚植... [309]
资源植物与生物技... [154]
昆明植物所硕博研... [135]
共享文献 [54]
植物化学与西部植物... [41]
中国西南野生生物种... [38]
更多...
作者
孙航 [84]
许建初 [81]
李德铢 [71]
周浙昆 [53]
高连明 [33]
杨永平 [30]
更多...
文献类型
期刊论文 [776]
学位论文 [135]
专著 [14]
其他 [9]
会议论文 [3]
会议录 [2]
更多...
发表日期
2021 [47]
2020 [96]
2019 [95]
2018 [76]
2017 [62]
2016 [65]
更多...
语种
英语 [535]
中文 [134]
出处
JOURNAL O... [35]
PHYTOTAXA [29]
PLOS ONE [29]
植物分类与资源学报 [26]
FUNGAL DI... [25]
JOURNAL O... [23]
更多...
资助项目
GST,p < 0.001) and low levels of seed-based gene flow. C. debaoensis (Cycadaceae) is an endangered species restricted to the border of Guangxi and Yunnan province in southwest China. This species has been classified into two types: sand and karst, according to the soil matrix they grow on. We examined chloroplast sequence variation of the cpDNA sequences from 11 populations of this species. Significant population genetic differentiation was detected (GST= 0.684 and FST = 0.74160). There was marked genetic differentiation between populations in the sand and karst regions and no expansion was detected. Climate changes during glacial periods have had significant effects on the current distribution of cycads. The molecular phylogenetic data, together with the geographic distribution of the haplotypes, suggest that C. debaoensis experienced range contraction during glacial periods, and that the current populations are still confined to the original refugia in southwest China which have favorable habitats in glacial period. These results imply that small refugia were maintained in both sand and karst regions during the LGM (last glacial maximum). This species had no postglacial recolonization and only stayed in these refugia up to now. The low within-population diversity of C. debaoensis suggests that there were strong bottleneck events or founder effects within each separate region during the Quaternary climatic oscillations. Relatively high genetic and haplotype diversities were detected in the newly discovered populations, which located at intermediate locality of sand regions and had morphological variation; this is probably the consequence of the admixture of different haplotypes colonizing the area from separate sources. C. micholitzii occurs in the Annan Highlands in central Vietnam near the Laos border. C. bifida occurs in North Vietnam; its distribution extends across the border into adjacent localities in Guangxi and Yunnan in China. For the comparability between them,theywere considered as the same species C. micholitzii by many academicians. The cpDNA sequences from 11 populations showed that these very controversial species, C. micholitzii and C. bifida, is paraphyletic and should belong to the same species C. micholitzii. AMOVA analysis showed that the component of among-population within region/species (76.46%) was unexpectedly larger than the among-species/region component (14.97%), which also indicates that there is no justification for recognizing two species as C. micholitzii and C. bifida. This hypothesis was also supported by the geological data, especially the neotectonic history of the indo-china block, which started to move south since Oligocene and cause the geographic isolation of these two groups. Therefore, the most likely explanation to the phenotypic similarities between these two groups may be the retention of ancestral polymorphisms in the paraphyletic group due to incomplete lineage sorting. Furthermore, the similarities may also be ascribed to pollen-mediated gene flow among geographically proximate populations and/or phenotypic convergence under similar selection schemes in the same region. C.micholitzi had the higest genetic diversity (HT = 0.980,) and genetic differentiation (GST = 0.830, NST = 0.915) among the C. micholitzii complex. The high genetic diversity might be attributed to its long evolutionary history, highly diverse habitats. The ineffective mode of seed dispersal and dramatic neotectonic movement in the distribution range of this species could result in the high genetic differentiation. 2. Phylogeographic analysis based on nuclear ribosomal sequences, We sequenced the nrDNA ITS in all 27 populations sampled, 7 haplotypes were identified, among which C. micholitzii had 6, while C. multipinnata, C. longipetiolula and C. debaoensis shared the remaining one. Compared to chloroplast genes, nuclear genes had higher correlation between genetic and geographical distance, but lower interspecies differentiation (54.42% vs 25.24%). Phylogeographical structure of C. micholitzii and C.bifida based on ITS Variation was consistent with the morphology differentiation. This similar in nuclear gene should be ascribed to pollen-mediated gene flow among geographically proximate populations.Long-distance gene flow over the two groups was clearly interrupted, which brought on the nrDNA genetic differenciation between the geographically isolated groups, to a certain extent affected the morphological variation. 3. Interspecies relationships among Cycas micholitzii complex, We analysed chloroplast sequence variation of the atpB-rbcL and psbA-trnH intergenic spacers in 27 populations sampled of C. micholitzii complex, AMOVA analysis showed that the component of among-species/region component (59.21%). However, phylogenic analysis showed that the haplotypes of C. micholitzii complex couldn`t grouped into four clusters closely corresponding to the narrowly defined C. micholitzi, C. multipinnata, C. debaoensis and C. longipetiolula. We concluded that the conflict may result from several factors: firstly incomplete lineage sorting of C. micholitzii; secondly hybridization/introgression of sympatrically cycads, which would be supported by evidence base on nrDNA ITS sequences; thirdly intramolecular recombination in cpDNA of cycads; eventually the neotectonic movement in the distribution range of this species.","jscount":"1","jsurl":"/simple-search?field1=all&field=location.comm.id&advanced=false&query1=Mountains%2Bof%2BSouthwest%2BChina&&fq=dc.project.title_filter%3ACycas%5C+micholitzii%5C+complex%5C+is%5C+composed%5C+of%5C+5%5C+species%5C%3A%5C+C.%5C+micholitzii%5C+Dyer%2C%5C+C.%5C+bifida%5C+%5C%28Dyer%5C%29%5C+K.%5C+D.%5C+Hill%2CC.%5C+longipetiolula%5C+D.%5C+Y.%5C+Wang%2C%5C+C.%5C+debaoensis%5C+Y.%5C+C.%5C+Zhong%5C+et%5C+C%5C+J.%5C+Chen%2C%5C+C.%5C+multipinnata%5C+C%5C+J.%5C+Chen%5C+et%5C+S.%5C+Y.%5C+Yang%EF%BC%8Cand%5C+distributed%5C+from%5C+southwest%5C+China%5C+to%5C+central%5C+Vietnam%5C+and%5C+eastern%5C+Laos.%5C+Based%5C+on%5C+sequence%5C+data%5C+from%5C+two%5C+maternally%5C+inherited%5C+cpDNA%5C+and%5C+one%5C+biparentally%5C+nuclear%5C+DNA%5C+fragments%2C%5C+our%5C+study%5C+revealed%5C+the%5C+population%5C+genetic%5C+structure%5C+of%5C+C.%5C+micholitzii%5C+complex%5C+and%5C+explored%5C+the%5C+potential%5C+causes.%5C+The%5C+evolutionary%5C+and%5C+demographic%5C+histories%5C+were%5C+investigated.%5C+The%5C+genetic%5C+relationship%5C+among%5C+species%5C+in%5C+the%5C+complex%5C+was%5C+also%5C+clarified.The%5C+results%5C+were%5C+summarized%5C+as%5C+follows%5C%3A%5C+1.%5C+Phylogeographic%5C+analysis%5C+based%5C+on%5C+chloroplast%5C+sequences%EF%BC%8CWe%5C+examined%5C+chloroplast%5C+sequence%5C+variation%5C+of%5C+the%5C+atpB%5C-rbcLand%5C+psbA%5C-trnHintergenic%5C+spacers%5C+in%5C+27%5C+populations%5C+of%5C+C.%5C+micholitzii%5C+complex%2C%5C+recovering%5C+26%5C+haplotypes.%5C+The%5C+average%5C+within%5C-population%5C+diversity%5C+%5C%28HS%5C+%3D%5C+0.140%5C%29%5C+was%5C+low%5C+while%5C+total%5C+diversity%5C+%5C%28HT%5C+%3D%5C+0.911%5C%29%5C+was%5C+high.%5C+Population%5C+differentiation%5C+was%5C+also%5C+high%5C%28GST%5C+%3D%5C+0.846%2C%5C+NST%5C+%3D%5C+0.919%5C%29%2C%5C+indicating%5C+significant%5C+phylogeographical%5C+structure%5C+%5C%28NST%5C+%3E%5C+GST%2Cp%5C+%3C%5C+0.001%5C%29%5C+and%5C+low%5C+levels%5C+of%5C+seed%5C-based%5C+gene%5C+flow.%5C+C.%5C+debaoensis%5C+%5C%28Cycadaceae%5C%29%5C+is%5C+an%5C+endangered%5C+species%5C+restricted%5C+to%5C+the%5C+border%5C+of%5C+Guangxi%5C+and%5C+Yunnan%5C+province%5C+in%5C+southwest%5C+China.%5C+This%5C+species%5C+has%5C+been%5C+classified%5C+into%5C+two%5C+types%5C%3A%5C+sand%5C+and%5C+karst%2C%5C+according%5C+to%5C+the%5C+soil%5C+matrix%5C+they%5C+grow%5C+on.%5C+We%5C+examined%5C+chloroplast%5C+sequence%5C+variation%5C+of%5C+the%5C+cpDNA%5C+sequences%5C+from%5C+11%5C+populations%5C+of%5C+this%5C+species.%5C+Significant%5C+population%5C+genetic%5C+differentiation%5C+was%5C+detected%5C+%5C%28GST%3D%5C+0.684%5C+and%5C+FST%5C+%3D%5C+0.74160%5C%29.%5C+There%5C+was%5C+marked%5C+genetic%5C+differentiation%5C+between%5C+populations%5C+in%5C+the%5C+sand%5C+and%5C+karst%5C+regions%5C+and%5C+no%5C+expansion%5C+was%5C+detected.%5C+Climate%5C+changes%5C+during%5C+glacial%5C+periods%5C+have%5C+had%5C+significant%5C+effects%5C+on%5C+the%5C+current%5C+distribution%5C+of%5C+cycads.%5C+The%5C+molecular%5C+phylogenetic%5C+data%2C%5C+together%5C+with%5C+the%5C+geographic%5C+distribution%5C+of%5C+the%5C+haplotypes%2C%5C+suggest%5C+that%5C+C.%5C+debaoensis%5C+experienced%5C+range%5C+contraction%5C+during%5C+glacial%5C+periods%2C%5C+and%5C+that%5C+the%5C+current%5C+populations%5C+are%5C+still%5C+confined%5C+to%5C+the%5C+original%5C+refugia%5C+in%5C+southwest%5C+China%5C+which%5C+have%5C+favorable%5C+habitats%5C+in%5C+glacial%5C+period.%5C+These%5C+results%5C+imply%5C+that%5C+small%5C+refugia%5C+were%5C+maintained%5C+in%5C+both%5C+sand%5C+and%5C+karst%5C+regions%5C+during%5C+the%5C+LGM%5C+%5C%28last%5C+glacial%5C+maximum%5C%29.%5C+This%5C+species%5C+had%5C+no%5C+postglacial%5C+recolonization%5C+and%5C+only%5C+stayed%5C+in%5C+these%5C+refugia%5C+up%5C+to%5C+now.%5C+The%5C+low%5C+within%5C-population%5C+diversity%5C+of%5C+C.%5C+debaoensis%5C+suggests%5C+that%5C+there%5C+were%5C+strong%5C+bottleneck%5C+events%5C+or%5C+founder%5C+effects%5C+within%5C+each%5C+separate%5C+region%5C+during%5C+the%5C+Quaternary%5C+climatic%5C+oscillations.%5C+Relatively%5C+high%5C+genetic%5C+and%5C+haplotype%5C+diversities%5C+were%5C+detected%5C+in%5C+the%5C+newly%5C+discovered%5C+populations%2C%5C+which%5C+located%5C+at%5C+intermediate%5C+locality%5C+of%5C+sand%5C+regions%5C+and%5C+had%5C+morphological%5C+variation%5C%3B%5C+this%5C+is%5C+probably%5C+the%5C+consequence%5C+of%5C+the%5C+admixture%5C+of%5C+different%5C+haplotypes%5C+colonizing%5C+the%5C+area%5C+from%5C+separate%5C+sources.%5C+%5C+C.%5C+micholitzii%5C+occurs%5C+in%5C+the%5C+Annan%5C+Highlands%5C+in%5C+central%5C+Vietnam%5C+near%5C+the%5C+Laos%5C+border.%5C+C.%5C+bifida%5C+occurs%5C+in%5C+North%5C+Vietnam%5C%3B%5C+its%5C+distribution%5C+extends%5C+across%5C+the%5C+border%5C+into%5C+adjacent%5C+localities%5C+in%5C+Guangxi%5C+and%5C+Yunnan%5C+in%5C+China.%5C+For%5C+the%5C+comparability%5C+between%5C+them%2Ctheywere%5C+considered%5C+as%5C+the%5C+same%5C+species%5C+C.%5C+micholitzii%5C+by%5C+many%5C+academicians.%5C+The%5C+cpDNA%5C+sequences%5C+from%5C+11%5C+populations%5C+showed%5C+that%5C+these%5C+very%5C+controversial%5C+species%2C%5C+C.%5C+micholitzii%5C+and%5C+C.%5C+bifida%2C%5C+is%5C+paraphyletic%5C+and%5C+should%5C+belong%5C+to%5C+the%5C+same%5C+species%5C+C.%5C+micholitzii.%5C+AMOVA%5C+analysis%5C+showed%5C+that%5C+the%5C+component%5C+of%5C+among%5C-population%5C+within%5C+region%5C%2Fspecies%5C+%5C%2876.46%25%5C%29%5C+was%5C+unexpectedly%5C+larger%5C+than%5C+the%5C+among%5C-species%5C%2Fregion%5C+component%5C+%5C%2814.97%25%5C%29%2C%5C+which%5C+also%5C+indicates%5C+that%5C+there%5C+is%5C+no%5C+justification%5C+for%5C+recognizing%5C+two%5C+species%5C+as%5C+C.%5C+micholitzii%5C+and%5C+C.%5C+bifida.%5C+This%5C+hypothesis%5C+was%5C+also%5C+supported%5C+by%5C+the%5C+geological%5C+data%2C%5C+especially%5C+the%5C+neotectonic%5C+history%5C+of%5C+the%5C+indo%5C-china%5C+block%2C%5C+which%5C+started%5C+to%5C+move%5C+south%5C+since%5C+Oligocene%5C+and%5C+cause%5C+the%5C+geographic%5C+isolation%5C+of%5C+these%5C+two%5C+groups.%5C+Therefore%2C%5C+the%5C+most%5C+likely%5C+explanation%5C+to%5C+the%5C+phenotypic%5C+similarities%5C+between%5C+these%5C+two%5C+groups%5C+may%5C+be%5C+the%5C+retention%5C+of%5C+ancestral%5C+polymorphisms%5C+in%5C+the%5C+paraphyletic%5C+group%5C+due%5C+to%5C+incomplete%5C+lineage%5C+sorting.%5C+Furthermore%2C%5C+the%5C+similarities%5C+may%5C+also%5C+be%5C+ascribed%5C+to%5C+pollen%5C-mediated%5C+gene%5C+flow%5C+among%5C+geographically%5C+proximate%5C+populations%5C+and%5C%2For%5C+phenotypic%5C+convergence%5C+under%5C+similar%5C+selection%5C+schemes%5C+in%5C+the%5C+same%5C+region.%5C+C.micholitzi%5C+had%5C+the%5C+higest%5C+genetic%5C+diversity%5C+%5C%28HT%5C+%3D%5C+0.980%2C%5C%29%5C+and%5C+genetic%5C+differentiation%5C+%5C%28GST%5C+%3D%5C+0.830%2C%5C+NST%5C+%3D%5C+0.915%5C%29%5C+among%5C+the%5C+C.%5C+micholitzii%5C+complex.%5C+The%5C+high%5C+genetic%5C+diversity%5C+might%5C+be%5C+attributed%5C+to%5C+its%5C+long%5C+evolutionary%5C+history%2C%5C+highly%5C+diverse%5C+habitats.%5C+The%5C+ineffective%5C+mode%5C+of%5C+seed%5C+dispersal%5C+and%5C+dramatic%5C+neotectonic%5C+movement%5C+in%5C+the%5C+distribution%5C+range%5C+of%5C+this%5C+species%5C+could%5C+result%5C+in%5C+the%5C+high%5C+genetic%5C+differentiation.%5C+2.%5C+Phylogeographic%5C+analysis%5C+based%5C+on%5C+nuclear%5C+ribosomal%5C+sequences%2C%5C+We%5C+sequenced%5C+the%5C+nrDNA%5C+ITS%5C+in%5C+all%5C+27%5C+populations%5C+sampled%2C%5C+7%5C+haplotypes%5C+were%5C+identified%2C%5C+among%5C+which%5C+C.%5C+micholitzii%5C+had%5C+6%2C%5C+while%5C+C.%5C+multipinnata%2C%5C+C.%5C+longipetiolula%5C+and%5C+C.%5C+debaoensis%5C+shared%5C+the%5C+remaining%5C+one.%5C+Compared%5C+to%5C+chloroplast%5C+genes%2C%5C+nuclear%5C+genes%5C+had%5C+higher%5C+correlation%5C+between%5C+genetic%5C+and%5C+geographical%5C+distance%2C%5C+but%5C+lower%5C+interspecies%5C+differentiation%5C+%5C%2854.42%25%5C+vs%5C+25.24%25%5C%29.%5C+Phylogeographical%5C+structure%5C+of%5C+C.%5C+micholitzii%5C+and%5C+C.bifida%5C+based%5C+on%5C+ITS%5C+Variation%5C+was%5C+consistent%5C+with%5C+the%5C+morphology%5C+differentiation.%5C+This%5C+similar%5C+in%5C+nuclear%5C+gene%5C+should%5C+be%5C+ascribed%5C+to%5C+pollen%5C-mediated%5C+gene%5C+flow%5C+among%5C+geographically%5C+proximate%5C+populations.Long%5C-distance%5C+gene%5C+flow%5C+over%5C+the%5C+two%5C+groups%5C+was%5C+clearly%5C+interrupted%2C%5C+which%5C+brought%5C+on%5C+the%5C+nrDNA%5C+genetic%5C+differenciation%5C+between%5C+the%5C+geographically%5C+isolated%5C+groups%2C%5C+to%5C+a%5C+certain%5C+extent%5C+affected%5C+the%5C+morphological%5C+variation.%5C+3.%5C+Interspecies%5C+relationships%5C+among%5C+Cycas%5C+micholitzii%5C+complex%2C%5C+We%5C+analysed%5C+chloroplast%5C+sequence%5C+variation%5C+of%5C+the%5C+atpB%5C-rbcL%5C+and%5C+psbA%5C-trnH%5C+intergenic%5C+spacers%5C+in%5C+27%5C+populations%5C+sampled%5C+of%5C+C.%5C+micholitzii%5C+complex%2C%5C+AMOVA%5C+analysis%5C+showed%5C+that%5C+the%5C+component%5C+of%5C+among%5C-species%5C%2Fregion%5C+component%5C+%5C%2859.21%25%5C%29.%5C+However%2C%5C+phylogenic%5C+analysis%5C+showed%5C+that%5C+the%5C+haplotypes%5C+of%5C+C.%5C+micholitzii%5C+complex%5C+couldn%60t%5C+grouped%5C+into%5C+four%5C+clusters%5C+closely%5C+corresponding%5C+to%5C+the%5C+narrowly%5C+defined%5C+C.%5C+micholitzi%2C%5C+C.%5C+multipinnata%2C%5C+C.%5C+debaoensis%5C+and%5C+C.%5C+longipetiolula.%5C+We%5C+concluded%5C+that%5C+the%5C+conflict%5C+may%5C+result%5C+from%5C+several%5C+factors%5C%3A%5C+firstly%5C+incomplete%5C+lineage%5C+sorting%5C+of%5C+C.%5C+micholitzii%5C%3B%5C+secondly%5C+hybridization%5C%2Fintrogression%5C+of%5C+sympatrically%5C+cycads%2C%5C+which%5C+would%5C+be%5C+supported%5C+by%5C+evidence%5C+base%5C+on%5C+nrDNA%5C+ITS%5C+sequences%5C%3B%5C+thirdly%5C+intramolecular%5C+recombination%5C+in%5C+cpDNA%5C+of%5C+cycads%5C%3B%5C+eventually%5C+the%5C+neotectonic%5C+movement%5C+in%5C+the%5C+distribution%5C+range%5C+of%5C+this%5C+species."},{"jsname":"Federal Ministry for Economic Cooperation and Development, Germany[13.1432.4-001.00]","jscount":"1","jsurl":"/simple-search?field1=all&field=location.comm.id&advanced=false&query1=Mountains%2Bof%2BSouthwest%2BChina&&fq=dc.project.title_filter%3AFederal%5C+Ministry%5C+for%5C+Economic%5C+Cooperation%5C+and%5C+Development%2C%5C+Germany%5C%5B13.1432.4%5C-001.00%5C%5D"},{"jsname":"GIZ/BMZ on behalf of the Government of the Federal Republic of Germany[13.1432.7-001.00]","jscount":"1","jsurl":"/simple-search?field1=all&field=location.comm.id&advanced=false&query1=Mountains%2Bof%2BSouthwest%2BChina&&fq=dc.project.title_filter%3AGIZ%5C%2FBMZ%5C+on%5C+behalf%5C+of%5C+the%5C+Government%5C+of%5C+the%5C+Federal%5C+Republic%5C+of%5C+Germany%5C%5B13.1432.7%5C-001.00%5C%5D"},{"jsname":"German Academic Exchange Service (DAAD)","jscount":"1","jsurl":"/simple-search?field1=all&field=location.comm.id&advanced=false&query1=Mountains%2Bof%2BSouthwest%2BChina&&fq=dc.project.title_filter%3AGerman%5C+Academic%5C+Exchange%5C+Service%5C+%5C%28DAAD%5C%29"},{"jsname":"Glory Light International Fellowship for Chinese Botanists at Missouri Botanical Garden","jscount":"1","jsurl":"/simple-search?field1=all&field=location.comm.id&advanced=false&query1=Mountains%2Bof%2BSouthwest%2BChina&&fq=dc.project.title_filter%3AGlory%5C+Light%5C+International%5C+Fellowship%5C+for%5C+Chinese%5C+Botanists%5C+at%5C+Missouri%5C+Botanical%5C+Garden"},{"jsname":"lastIndexed","jscount":"2024-04-25"}],"资助项目","dc.project.title_filter")'>
13th Five-... [1]
973 Progra... [1]
Astilbe Bu... [1]
Basic Work... [1]
Bureau of ... [1]
CAS Light ... [1]
更多...
收录类别
SCI [545]
CSCD [31]
SSCI [22]
IC [4]
ISTP [2]
资助机构
CAS/SAFEA ... [7]
National K... [7]
Chinese Ac... [6]
National N... [6]
Applied Fu... [5]
China Scho... [4]
更多...
×
知识图谱
KIB OpenIR
开始提交
已提交作品
待认领作品
已认领作品
未提交全文
收藏管理
QQ客服
官方微博
反馈留言
分面浏览：Collection
当前检索式
((ALL：Mountains of Southwest China))
限定条件
无
共15条，第1-15条
中国科学院昆明植物研究所
942
中国科学院东亚植物多样性与生物地理学重点
309
资源植物与生物技术所级重点实验室
154
昆明植物所硕博研究生毕业学位论文
135
共享文献
54
植物化学与西部植物资源持续利用国家重点实
41
中国西南野生生物种质资源库
38
离退休
16
电子图书
15
植物分类与资源学报
15
管理部门
12
中国科学院青藏高原研究所昆明部
8
云南省植物学会
3
会议文集
3
会议课件
2
