Ancient Duplication and Lineage-Specific Transposition Determine Evolutionary Trajectory of ERF Subfamily across Angiosperms

doi:10.3390/ijms25073941

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	Ancient Duplication and Lineage-Specific Transposition Determine Evolutionary Trajectory of ERF Subfamily across Angiosperms
	Zhu, Xun-Ge; Hutang, Ge-Ran; Gao, Li-Zhi
	2024
发表期刊	INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
ISSN	1661-6596
卷号	25 期号:7 页码:3941
摘要	AP2/ERF transcription factor family plays an important role in plant development and stress responses. Previous studies have shed light on the evolutionary trajectory of the AP2 and DREB subfamilies. However, knowledge about the evolutionary history of the ERF subfamily in angiosperms still remains limited. In this study, we performed a comprehensive analysis of the ERF subfamily from 107 representative angiosperm species by combining phylogenomic and synteny network approaches. We observed that the expansion of the ERF subfamily was driven not only by whole-genome duplication (WGD) but also by tandem duplication (TD) and transposition duplication events. We also found multiple transposition events in Poaceae, Brassicaceae, Poales, Brassicales, and Commelinids. These events may have had notable impacts on copy number variation and subsequent functional divergence of the ERF subfamily. Moreover, we observed a number of ancient tandem duplications occurred in the ERF subfamily across angiosperms, e.g., in Subgroup IX, IXb originated from ancient tandem duplication events within IXa. These findings together provide novel insights into the evolution of this important transcription factor family.
DOI	10.3390/ijms25073941
WOS记录号	WOS:001201515800001
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/76361
专题	中国科学院昆明植物研究所
推荐引用方式 GB/T 7714	Zhu, Xun-Ge,Hutang, Ge-Ran,Gao, Li-Zhi. Ancient Duplication and Lineage-Specific Transposition Determine Evolutionary Trajectory of ERF Subfamily across Angiosperms[J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,2024,25(7):3941.
APA	Zhu, Xun-Ge,Hutang, Ge-Ran,&Gao, Li-Zhi.(2024).Ancient Duplication and Lineage-Specific Transposition Determine Evolutionary Trajectory of ERF Subfamily across Angiosperms.INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,25(7),3941.
MLA	Zhu, Xun-Ge,et al."Ancient Duplication and Lineage-Specific Transposition Determine Evolutionary Trajectory of ERF Subfamily across Angiosperms".INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 25.7(2024):3941.

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