Unravelling the novel sex determination genotype with 'ZY' and a distinctive 2.15-2.95 Mb inversion among poplar species through haplotype-resolved genome assembly and comparative genomics analysis

doi:10.1111/1755-0998.14002

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	Unravelling the novel sex determination genotype with 'ZY' and a distinctive 2.15-2.95 Mb inversion among poplar species through haplotype-resolved genome assembly and comparative genomics analysis
	Li, Juan; Chen, Tingting; Gao, Kai; Xue, Yinxuan; Wu, Ruqian; Guo, Bin; Chen, Zhong; Li, Shanwen; Zhang, Ren-Gang; Jia, Kai-Hua; Mao, Jian-Feng; An, Xinmin
	2024
发表期刊	MOLECULAR ECOLOGY RESOURCES
ISSN	1755-098X
卷号	24 期号:7 页码:-
摘要	Populus tomentosa, an indigenous tree species, is widely distributed and cultivated over 1,000,000 km2 in China, contributing significantly to forest production, ecological conservation and urban-rural greening. Although a reference genome is available for P. tomentosa, the intricate interspecific hybrid origins, chromosome structural variations (SVs) and sex determination mechanisms remain confusion and unclear due to its broad and even overlapping geographical distribution, extensive morphological variations and cross infiltration among white poplar species. We conducted a haplotype-resolved de novo assembly of P. tomentosa elite individual GM107, which comprises subgenomes a and b with a total genome size of 714.9 Mb. We then analysed the formation of hybrid species and the phylogenetic evolution and sex differentiation across the entire genus. Phylogenomic analyses suggested that GM107 likely originated from a hybridisation event between P. alba (female) and P. davidiana (male) approximately 3.8 Mya. A total of 1551 chromosome SVs were identified between the two subgenomes. More noteworthily, a distinctive inversion structure spanning 2.15-2.95 Mb was unveiled among Populus, Tacamahaca, Turaga, Aigeiros poplar species and Salix, highlighting a unique evolutionary feature. Intriguingly, a novel sex genotype of the ZY type, which represents a crossover between XY and ZW systems, was identified and confirmed through both natural and artificial hybrids populations. These novel insights offer significant theoretical value for the study of the species' evolutionary origins and serve as a valuable resource for ecological genetics and forest biotechnology.
DOI	10.1111/1755-0998.14002
WOS记录号	WOS:001282944000001
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/76290
专题	中国科学院昆明植物研究所
推荐引用方式 GB/T 7714	Li, Juan,Chen, Tingting,Gao, Kai,et al. Unravelling the novel sex determination genotype with 'ZY' and a distinctive 2.15-2.95 Mb inversion among poplar species through haplotype-resolved genome assembly and comparative genomics analysis[J]. MOLECULAR ECOLOGY RESOURCES,2024,24(7):-.
APA	Li, Juan.,Chen, Tingting.,Gao, Kai.,Xue, Yinxuan.,Wu, Ruqian.,...&An, Xinmin.(2024).Unravelling the novel sex determination genotype with 'ZY' and a distinctive 2.15-2.95 Mb inversion among poplar species through haplotype-resolved genome assembly and comparative genomics analysis.MOLECULAR ECOLOGY RESOURCES,24(7),-.
MLA	Li, Juan,et al."Unravelling the novel sex determination genotype with 'ZY' and a distinctive 2.15-2.95 Mb inversion among poplar species through haplotype-resolved genome assembly and comparative genomics analysis".MOLECULAR ECOLOGY RESOURCES 24.7(2024):-.

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