Population structure of wild soybean (Glycine soja) based on SLAF-seq have implications for its conservation

doi:10.7717/peerj.16415

KIB OpenIR

	Population structure of wild soybean (Glycine soja) based on SLAF-seq have implications for its conservation
	Meng,Jing; Yang,Guoqian; Li,Xuejiao; Zhao,Yan; He,Shuilian
	2023
发表期刊	PEERJ
卷号	11 页码:e16415
摘要	Background: Glycine soja Sieb. & Zucc. is the wild ancestor from which the important crop plant soybean was bred. G. soja provides important germplasm resources for the breeding and improvement of cultivated soybean crops, however the species is threatened by habitat loss and fragmentation, and is experiencing population declines across its natural range. Understanding the patterns of genetic diversity in G. soja populations can help to inform conservation practices.Methods: In this study, we analyzed the genetic diversity and differentiation of G. soja at different sites and investigated the gene flow within the species. We obtained 147 G. soja accessions collected from 16 locations across the natural range of the species from China, Korea and Japan. Samples were analyzed using SLAF-seq (Specific-Locus Amplified Fragment Sequencing).Results: We obtained a total of 56,489 highly consistent SNPs. Our results suggested that G. soja harbors relatively high diversity and that populations of this species are highly differentiated. The populations harboring high genetic diversity, especially KR, should be considered first when devising conservation plans for the protection of G. soja, and in situ protection should be adopted in KR. G. soja populations from the Yangtze River, the Korean peninsula and northeastern China have a close relationship, although these areas are geographically disconnected. Other populations from north China clustered together. Analysis of gene flow suggested that historical migrations of G. soja may have occurred from the south northwards across the East-Asia land-bridge, but not across north China. All G. soja populations could be divided into one of two lineages, and these two lineages should be treated separately when formulating protection policies.
关键词	Glycine soja SLAF-seq Genetic diversity Population structure SPATIAL GENETIC-STRUCTURE TOOL SET DIVERSITY SIEB. CHINESE DNA ZUCC. DIFFERENTIATION PHYLOGEOGRAPHY HISTORY
DOI	10.7717/peerj.16415
收录类别	SCI
WOS记录号	WOS:001110035300001
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/75378
专题	中国科学院昆明植物研究所
推荐引用方式 GB/T 7714	Meng,Jing,Yang,Guoqian,Li,Xuejiao,et al. Population structure of wild soybean (Glycine soja) based on SLAF-seq have implications for its conservation[J]. PEERJ,2023,11:e16415.
APA	Meng,Jing,Yang,Guoqian,Li,Xuejiao,Zhao,Yan,&He,Shuilian.(2023).Population structure of wild soybean (Glycine soja) based on SLAF-seq have implications for its conservation.PEERJ,11,e16415.
MLA	Meng,Jing,et al."Population structure of wild soybean (Glycine soja) based on SLAF-seq have implications for its conservation".PEERJ 11(2023):e16415.

条目包含的文件		下载所有文件
文件名称/大小	文献类型	版本类型	开放类型	使用许可
peerj-16415.pdf（8371KB）	期刊论文	出版稿	开放获取	CC BY-NC-SA	浏览下载