A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering

doi:10.1111/tpj.16452

KIB OpenIR

	A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering
	Zhao,Jiu-Xia; Wang,Shu; Liu,Jiazhi; Jiang,Xiao-Dong; Wen,Jing; Suo,Zhi-Quan; Liu,Jie; Zhong,Mi-Cai; Wang,Qin; Gu,Zhirong; Liu,Changning; Deng,Yunfei; Hu,Jin-Yong; Li,De-Zhu
	2023
发表期刊	PLANT JOURNAL
ISSN	1365-313X
卷号	116 期号:6 页码:1842-1855
摘要	Perennial monocarpic mass flowering represents as a key developmental innovation in flowering time diver-sity in several biological and economical essential families, such as the woody bamboos and the shrubby Strobilanthes. However, molecular and genetic mechanisms underlying this important biodiversity remain poorly investigated. Here, we generated a full-length transcriptome resource incorporated into the BlueO-mics database (http://blueomics.iflora.cn) for two Strobilanthes species, which feature contrasting flowering time behaviors. Using about 112 and 104 Gb Iso-seq reads together with similar to 185 and similar to 75 Gb strand-specific RNA seq data, we annotated 80 971 and 79 985 non-redundant full-length transcripts for the perennial polycarpic Strobilanthes tetrasperma and the perennial monocarpic Strobilanthes biocullata, respectively. In S. tetrasperma, we identified 8794 transcripts showing spatiotemporal expression in nine tissues. In leaves and shoot apical meristems at two developmental stages, 977 and 1121 transcripts were differen-tially accumulated in S. tetrasperma and S. biocullata, respectively. Interestingly, among the 33 transcrip-tion factors showing differential expression in S. tetrasperma but without differential expression in S. biocullata, three were involved potentially in the photoperiod and circadian-clock pathway of flowering time regulation (FAR1 RELATED SEQUENCE 12, FRS12; NUCLEAR FACTOR Y A1, NFYA1; PSEUDO-RESPONSE REGULATOR 5, PRR5), hence provides an important clue in deciphering the flowering diversity mechanisms. Our data serve as a key resource for further dissection of molecular and genetic mechanisms underpinning key biological innovations, here, the perennial monocarpic mass flowering.
关键词	perennial monocarpic mass flowering Strobilanthes ISO-seq RNA-seq BlueOmics PSEUDO-RESPONSE REGULATORS STROBILANTHES ACANTHACEAE EXPRESSION ANALYSIS GENE TIME PROTEIN LONG FKF1 PRR5 CLASSIFICATION
DOI	10.1111/tpj.16452
收录类别	SCI
WOS记录号	WOS:001061282200001
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/75247
专题	中国科学院昆明植物研究所
推荐引用方式 GB/T 7714	Zhao,Jiu-Xia,Wang,Shu,Liu,Jiazhi,et al. A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering[J]. PLANT JOURNAL,2023,116(6):1842-1855.
APA	Zhao,Jiu-Xia.,Wang,Shu.,Liu,Jiazhi.,Jiang,Xiao-Dong.,Wen,Jing.,...&Li,De-Zhu.(2023).A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering.PLANT JOURNAL,116(6),1842-1855.
MLA	Zhao,Jiu-Xia,et al."A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering".PLANT JOURNAL 116.6(2023):1842-1855.

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