Knowledge Management System of Kunming Institute of Botany,CAS
| A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering | |
Zhao,Jiu-Xia; Wang,Shu; Liu,Jiazhi; Jiang,Xiao-Dong; Wen,Jing; Suo,Zhi-Quan; Liu,Jie ; Zhong,Mi-Cai; Wang,Qin; Gu,Zhirong; Liu,Changning; Deng,Yunfei; Hu,Jin-Yong; Li,De-Zhu
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| 2023 | |
| Source Publication | PLANT JOURNAL
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| ISSN | 1365-313X |
| Volume | 116Issue:6Pages:1842-1855 |
| Abstract | Perennial monocarpic mass flowering represents as a key developmental innovation in flowering time diver-sity in several biological and economical essential families, such as the woody bamboos and the shrubby Strobilanthes. However, molecular and genetic mechanisms underlying this important biodiversity remain poorly investigated. Here, we generated a full-length transcriptome resource incorporated into the BlueO-mics database (http://blueomics.iflora.cn) for two Strobilanthes species, which feature contrasting flowering time behaviors. Using about 112 and 104 Gb Iso-seq reads together with similar to 185 and similar to 75 Gb strand-specific RNA seq data, we annotated 80 971 and 79 985 non-redundant full-length transcripts for the perennial polycarpic Strobilanthes tetrasperma and the perennial monocarpic Strobilanthes biocullata, respectively. In S. tetrasperma, we identified 8794 transcripts showing spatiotemporal expression in nine tissues. In leaves and shoot apical meristems at two developmental stages, 977 and 1121 transcripts were differen-tially accumulated in S. tetrasperma and S. biocullata, respectively. Interestingly, among the 33 transcrip-tion factors showing differential expression in S. tetrasperma but without differential expression in S. biocullata, three were involved potentially in the photoperiod and circadian-clock pathway of flowering time regulation (FAR1 RELATED SEQUENCE 12, FRS12; NUCLEAR FACTOR Y A1, NFYA1; PSEUDO-RESPONSE REGULATOR 5, PRR5), hence provides an important clue in deciphering the flowering diversity mechanisms. Our data serve as a key resource for further dissection of molecular and genetic mechanisms underpinning key biological innovations, here, the perennial monocarpic mass flowering. |
| Keyword | perennial monocarpic mass flowering Strobilanthes ISO-seq RNA-seq BlueOmics PSEUDO-RESPONSE REGULATORS STROBILANTHES ACANTHACEAE EXPRESSION ANALYSIS GENE TIME PROTEIN LONG FKF1 PRR5 CLASSIFICATION |
| DOI | 10.1111/tpj.16452 |
| Indexed By | SCI |
| WOS ID | WOS:001061282200001 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.kib.ac.cn/handle/151853/75247 |
| Collection | 中国科学院昆明植物研究所 |
| Recommended Citation GB/T 7714 | Zhao,Jiu-Xia,Wang,Shu,Liu,Jiazhi,et al. A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering[J]. PLANT JOURNAL,2023,116(6):1842-1855. |
| APA | Zhao,Jiu-Xia.,Wang,Shu.,Liu,Jiazhi.,Jiang,Xiao-Dong.,Wen,Jing.,...&Li,De-Zhu.(2023).A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering.PLANT JOURNAL,116(6),1842-1855. |
| MLA | Zhao,Jiu-Xia,et al."A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering".PLANT JOURNAL 116.6(2023):1842-1855. |
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| 10.1111_tpj.16452.pd（3213KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Download | |
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