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| Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata) | |
Liu,Detuan ; Tian,Xiaoling; Shao,Shicheng; Ma,Yongpeng; Zhang,Rengang
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| 2023 | |
| Source Publication | SCIENTIFIC DATA
 |
| ISSN | 2052-4463 |
| Volume | 10Issue:1Pages:901 |
| Abstract | Microcos paniculata is a shrub used traditionally as folk medicine and to make herbal teas. Previous research into this species has mainly focused on its chemical composition and medicinal value. However, the lack of a reference genome limits the study of the molecular mechanisms of active compounds in this species. Here, we assembled a haplotype-resolved chromosome-level genome of M. paniculata based on PacBio HiFi and Hi-C data. The assembly contains two haploid genomes with sizes 399.43 Mb and 393.10 Mb, with contig N50 lengths of 43.44 Mb and 30.17 Mb, respectively. About 99.93% of the assembled sequences could be anchored to 18 pseudo-chromosomes. Additionally, a total of 482 Mb repeat sequences were identified, accounting for 60.76% of the genome. A total of 49,439 protein-coding genes were identified, of which 48,979 (99%) were functionally annotated. This haplotype-resolved chromosome-level assembly and annotation of M. paniculata will serve as a valuable resource for investigating the biosynthesis and genetic basis of active compounds in this species, as well as advancing evolutionary phylogenomic studies in Malvales. |
| Keyword | ANNOTATION PROVIDES SYSTEM |
| DOI | 10.1038/s41597-023-02821-9 |
| WOS ID | WOS:001127198200001 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.kib.ac.cn/handle/151853/74877 |
| Collection | 中国科学院昆明植物研究所 |
| Recommended Citation GB/T 7714 | Liu,Detuan,Tian,Xiaoling,Shao,Shicheng,et al. Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata)[J]. SCIENTIFIC DATA,2023,10(1):901. |
| APA | Liu,Detuan,Tian,Xiaoling,Shao,Shicheng,Ma,Yongpeng,&Zhang,Rengang.(2023).Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata).SCIENTIFIC DATA,10(1),901. |
| MLA | Liu,Detuan,et al."Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata)".SCIENTIFIC DATA 10.1(2023):901. |
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| File Name/Size | DocType | Version | Access | License | ||
| 10.1038_s41597-023-0（6049KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Download | |
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