Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata)

doi:10.1038/s41597-023-02821-9

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	Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata)
	Liu,Detuan; Tian,Xiaoling; Shao,Shicheng; Ma,Yongpeng; Zhang,Rengang
	2023
发表期刊	SCIENTIFIC DATA
ISSN	2052-4463
卷号	10 期号:1 页码:901
摘要	Microcos paniculata is a shrub used traditionally as folk medicine and to make herbal teas. Previous research into this species has mainly focused on its chemical composition and medicinal value. However, the lack of a reference genome limits the study of the molecular mechanisms of active compounds in this species. Here, we assembled a haplotype-resolved chromosome-level genome of M. paniculata based on PacBio HiFi and Hi-C data. The assembly contains two haploid genomes with sizes 399.43 Mb and 393.10 Mb, with contig N50 lengths of 43.44 Mb and 30.17 Mb, respectively. About 99.93% of the assembled sequences could be anchored to 18 pseudo-chromosomes. Additionally, a total of 482 Mb repeat sequences were identified, accounting for 60.76% of the genome. A total of 49,439 protein-coding genes were identified, of which 48,979 (99%) were functionally annotated. This haplotype-resolved chromosome-level assembly and annotation of M. paniculata will serve as a valuable resource for investigating the biosynthesis and genetic basis of active compounds in this species, as well as advancing evolutionary phylogenomic studies in Malvales.
关键词	ANNOTATION PROVIDES SYSTEM
DOI	10.1038/s41597-023-02821-9
WOS记录号	WOS:001127198200001
引用统计	被引频次：1[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/74877
专题	中国科学院昆明植物研究所
推荐引用方式 GB/T 7714	Liu,Detuan,Tian,Xiaoling,Shao,Shicheng,et al. Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata)[J]. SCIENTIFIC DATA,2023,10(1):901.
APA	Liu,Detuan,Tian,Xiaoling,Shao,Shicheng,Ma,Yongpeng,&Zhang,Rengang.(2023).Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata).SCIENTIFIC DATA,10(1),901.
MLA	Liu,Detuan,et al."Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata)".SCIENTIFIC DATA 10.1(2023):901.

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