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Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata)
Liu,Detuan; Tian,Xiaoling; Shao,Shicheng; Ma,Yongpeng; Zhang,Rengang
2023
Source PublicationSCIENTIFIC DATA
ISSN2052-4463
Volume10Issue:1Pages:901
AbstractMicrocos paniculata is a shrub used traditionally as folk medicine and to make herbal teas. Previous research into this species has mainly focused on its chemical composition and medicinal value. However, the lack of a reference genome limits the study of the molecular mechanisms of active compounds in this species. Here, we assembled a haplotype-resolved chromosome-level genome of M. paniculata based on PacBio HiFi and Hi-C data. The assembly contains two haploid genomes with sizes 399.43 Mb and 393.10 Mb, with contig N50 lengths of 43.44 Mb and 30.17 Mb, respectively. About 99.93% of the assembled sequences could be anchored to 18 pseudo-chromosomes. Additionally, a total of 482 Mb repeat sequences were identified, accounting for 60.76% of the genome. A total of 49,439 protein-coding genes were identified, of which 48,979 (99%) were functionally annotated. This haplotype-resolved chromosome-level assembly and annotation of M. paniculata will serve as a valuable resource for investigating the biosynthesis and genetic basis of active compounds in this species, as well as advancing evolutionary phylogenomic studies in Malvales.
KeywordANNOTATION PROVIDES SYSTEM
DOI10.1038/s41597-023-02821-9
WOS IDWOS:001127198200001
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Document Type期刊论文
Identifierhttp://ir.kib.ac.cn/handle/151853/74877
Collection中国科学院昆明植物研究所
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GB/T 7714
Liu,Detuan,Tian,Xiaoling,Shao,Shicheng,et al. Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata)[J]. SCIENTIFIC DATA,2023,10(1):901.
APA Liu,Detuan,Tian,Xiaoling,Shao,Shicheng,Ma,Yongpeng,&Zhang,Rengang.(2023).Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata).SCIENTIFIC DATA,10(1),901.
MLA Liu,Detuan,et al."Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata)".SCIENTIFIC DATA 10.1(2023):901.
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