The chromosome-level genome assembly and genes involved in biosynthesis of nervonic acid of Malania oleifera

doi:10.1038/s41597-023-02218-8

KIB OpenIR

	The chromosome-level genome assembly and genes involved in biosynthesis of nervonic acid of Malania oleifera
	Yang,Tianquan; Zhang,Rengang; Tian,Xiaoling; Yao,Gang; Shen,Yuanting; Wang,Sihai; Mao,Jianfeng; Li,Guangyuan; Liu,Aizhong; Sun,Weibang; Ma,Yongpeng
	2023
发表期刊	SCIENTIFIC DATA
ISSN	2052-4463
卷号	10 期号:1 页码:298
摘要	Nervonic acid (C24:1 Delta 15, NA) is a very long-chain monounsaturated fatty acid, a clinically indispensable resource in maintaining the brain and nerve cells development and regeneration. Till now, NA has been found in 38 plant species, among which the garlic-fruit tree (Malania oleifera) has been evaluated to be the best candidate for NA production. Here, we generated a high-quality chromosome-scale assembly of M. oleifera employing PacBio long-read, short-read Illumina as well as Hi-C sequencing data. The genome assembly consisted of 1.5 Gb with a contig N50 of similar to 4.9 Mb and a scaffold N50 of similar to 112.6 Mb. similar to 98.2% of the assembly was anchored into 13 pseudo-chromosomes. It contains similar to 1123 Mb repeat sequences, and 27,638 protein-coding genes, 568 tRNAs, 230 rRNAs and 352 other non-coding RNAs. Additionally, we documented candidate genes involved in NA biosynthesis including 20 KCSs, 4 KCRs, 1 HCD and 1 ECR, and profiled the expression patterns of these genes in developing seeds. The high-quality assembly of the genome provides insights into the genome evolution of the M. oleifera genome and candidate genes involved in NA biosynthesis in the seeds of this important woody tree.
关键词	ALIGNMENT PROVIDES PROGRAM SYSTEM HISAT
学科领域	Science & Technology - Other Topics
DOI	10.1038/s41597-023-02218-8
WOS记录号	WOS:001001317800003
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/74873
专题	中国科学院昆明植物研究所
推荐引用方式 GB/T 7714	Yang,Tianquan,Zhang,Rengang,Tian,Xiaoling,et al. The chromosome-level genome assembly and genes involved in biosynthesis of nervonic acid of Malania oleifera[J]. SCIENTIFIC DATA,2023,10(1):298.
APA	Yang,Tianquan.,Zhang,Rengang.,Tian,Xiaoling.,Yao,Gang.,Shen,Yuanting.,...&Ma,Yongpeng.(2023).The chromosome-level genome assembly and genes involved in biosynthesis of nervonic acid of Malania oleifera.SCIENTIFIC DATA,10(1),298.
MLA	Yang,Tianquan,et al."The chromosome-level genome assembly and genes involved in biosynthesis of nervonic acid of Malania oleifera".SCIENTIFIC DATA 10.1(2023):298.

条目包含的文件		下载所有文件
文件名称/大小	文献类型	版本类型	开放类型	使用许可
10.1038_s41597-023-0（3488KB）	期刊论文	出版稿	开放获取	CC BY-NC-SA	浏览下载