Genomic characterization and expression profiles of stress-associated proteins (SAPs) in castor bean (Ricinus communis)

doi:10.1016/j.pld.2020.07.010

KIB OpenIR

	Genomic characterization and expression profiles of stress-associated proteins (SAPs) in castor bean (Ricinus communis)
	Wang,Zaiqing ; Kuang,Jingge ; Han,Bing ; Chen,Suiyun ; Liu,Aizhong
	2021
发表期刊	PLANT DIVERSITY
ISSN	2096-2703
卷号	43 期号:2 页码:152-162
摘要	Stress-associated proteins (SAPs) are known as response factors to multiple abiotic and biotic stresses in plants. However, the potential physiological and molecular functions of SAPs remain largely unclear. Castor bean (Ricinus communis L.) is one of the most economically valuable non-edible woody oilseed crops, able to be widely cultivated in marginal lands worldwide because of its broad adaptive capacity to soil and climate conditions. Whether SAPs in castor bean plays a key role in adapting diverse soil conditions and stresses remains unknown. In this study, we used the castor bean genome to identify and characterize nine castor bean SAP genes (RcSAP). Structural analysis showed that castor bean SAP gene structures and functional domain types vary greatly, differing in intron number, protein sequence, and functional domain type. Notably, the AN1-C2H2-C2H2 zinc finger domain within RcSAP9 has not been often observed in other plant families. High throughput RNA-seq data showed that castor bean SAP gene profiles varied among different tissues. In addition, castor bean SAP gene expression varied in response to different stresses, including salt, drought, heat, cold and ABA and MeJA, suggesting that the transcriptional regulation of castor bean SAP genes might operate independently of each other, and at least partially independent from ABA and MeJA signal pathways. Cis-element analyses for each castor bean SAP gene showed that no common cis-elements are shared across the nine castor bean SAP genes. Castor bean SAPs were localized to different regions of cells, including the cytoplasm, nucleus, and cytomembrane. This study provides a comprehensive profile of castor bean SAP genes that advances our understanding of their potential physiological and molecular functions in regulating growth and development and their responses to different abiotic stresses. Copyright (C) 2020 Kunming Institute of Botany, Chinese Academy of Sciences. Publishing services by Elsevier B.V. on behalf of KeAi Communications Co., Ltd.
关键词	Castor bean Genomic characterization Stress-associated proteins Expression profile A20/AN1 ZINC-FINGER WATER-DEFICIT STRESS ABIOTIC STRESS GENE FAMILY CONFERS TOLERANCE WIDE IDENTIFICATION POSITIVE REGULATOR SALT STRESS RICE OVEREXPRESSION
DOI	10.1016/j.pld.2020.07.010
WOS记录号	WOS:000644759700008
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/73480
专题	中国科学院昆明植物研究所
作者单位	1.Yunnan Univ, Coll Life Sci, Kunming 650091, Yunnan, Peoples R China 2.Chinese Acad Sci, Kunming Inst Bot, Dept Econ Plants & Biotechnol, Yunnan Key Lab Wild Plant Resources, Kunming 650204, Yunnan, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.Southwest Forestry Univ, Key Lab Forest Resources Conservat & Utilizat Sou, Minist Educ, Kunming 650224, Yunnan, Peoples R China
推荐引用方式 GB/T 7714	Wang,Zaiqing,Kuang,Jingge,Han,Bing,et al. Genomic characterization and expression profiles of stress-associated proteins (SAPs) in castor bean (Ricinus communis)[J]. PLANT DIVERSITY,2021,43(2):152-162.
APA	Wang,Zaiqing,Kuang,Jingge,Han,Bing,Chen,Suiyun,&Liu,Aizhong.(2021).Genomic characterization and expression profiles of stress-associated proteins (SAPs) in castor bean (Ricinus communis).PLANT DIVERSITY,43(2),152-162.
MLA	Wang,Zaiqing,et al."Genomic characterization and expression profiles of stress-associated proteins (SAPs) in castor bean (Ricinus communis)".PLANT DIVERSITY 43.2(2021):152-162.