Knowledge Management System of Kunming Institute of Botany,CAS
| The Global Soil Mycobiome consortium dataset for boosting fungal diversity research | |
| Tedersoo,Leho; Mikryukov,Vladimir; Anslan,Sten; Bahram,Mohammad; Khalid,Abdul Nasir; Corrales,Adriana; Agan,Ahto; Vasco-Palacios,Aida-M; Saitta,Alessandro; Antonelli,Alexandre; Rinaldi,Andrea C.; Verbeken,Annemieke; Sulistyo,Bobby P.; Tamgnoue,Boris; Furneaux,Brendan; Ritter,Camila Duarte; Nyamukondiwa,Casper; Sharp,Cathy; Marin,Cesar; Dai,D. Q.; Gohar,Daniyal; Sharmah,Dipon; Biersma,Elisabeth Machteld; Cameron,Erin K.; De Crop,Eske; Otsing,Eveli; Davydov,Evgeny A.; Albornoz,Felipe E.; Brearley,Francis Q.; Buegger,Franz; Gates,Genevieve; Zahn,Geoffrey; Bonito,Gregory; Hiiesalu,Indrek; Hiiesalu,Inga; Zettur,Irma; Barrio,Isabel C.; Parn,Jaan; Heilmann-Clausen,Jacob; Ankuda,Jelena; Kupagme,John Y.; Sarapuu,Joosep; Macia-Vicente,Jose G.; Fovo,Joseph Djeugap; Geml,Jozsef; Alatalo,Juha M.; Alvarez-Manjarrez,Julieta; Monkai,Jutamart; Poldmaa,Kadri; Runnel,Kadri; Adamson,Kalev; Brathen,Kari A.; Pritsch,Karin; Tchan,Kassim,I; Armolaitis,Kestutis; Hyde,Kevin D.; Newsham,Kevin K.; Panksep,Kristel; Adebola,Lateef A.; Lamit,Louis J.; Saba,Malka; da Silva Caceres,Marcela E.; Tuomi,Maria; Gryzenhout,Marieka; Bauters,Marijn; Balint,Miklos; Wijayawardene,Nalin; Hagh-Doust,Niloufar; Yorou,Nourou S.; Kurina,Olavi; Mortimer,Peter E.; Meidl,Peter; Nilsson,R. Henrik; Puusepp,Rasmus; Casique-Valdes,Rebeca; Drenkhan,Rein; Garibay-Orijel,Roberto; Godoy,Roberto; Alfarraj,Saleh; Rahimlou,Saleh; Polme,Sergei; Dudov,Sergey,V; Mundra,Sunil; Ahmed,Talaat; Netherway,Tarquin; Henkel,Terry W.; Roslin,Tomas; Fedosov,Vladimir E.; Onipchenko,Vladimir G.; Yasanthika,W. A. Erandi; Lim,Young Woon; Piepenbring,Meike; Klavina,Darta; Koljalg,Urmas; Abarenkov,Kessy | |
| 2021 | |
| 发表期刊 | FUNGAL DIVERSITY
 |
| ISSN | 1560-2745 |
| 卷号 | 111期号:1页码:573-588 |
| 摘要 | Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository. |
| 关键词 | Soil fungi Global dataset PacBio sequencing Fungal richness IDENTIFICATION |
| DOI | 10.1007/s13225-021-00493-7 |
| WOS记录号 | WOS:000723974500001 |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.kib.ac.cn/handle/151853/73280 |
| 专题 | 中国科学院昆明植物研究所 |
| 作者单位 | 1.Univ Tartu, Mycol & Microbiol Ctr, Tartu, Estonia 2.Inst Ecol & Earth Sci, Tartu, Estonia 3.Swedish Univ Agr Sci, Dept Ecol, Uppsala, Sweden 4.Univ Punjab, Dept Bot, Quaid E Azam Campus, Lahore, Pakistan 5.Univ Rosario, Fac Ciencias Nat, Ctr Invest Microbiol & Biotecnol UR CIMBIUR, Bogota, Colombia 6.Univ Antioquia UdeA, Escuela Microbiol, Grp Microbiol Ambiental & BioMicro, Medellin, Colombia 7.Univ Palermo, Dept Agr Food & Forest Sci, Palermo, Italy 8.Royal Bot Gardens, Surrey, England 9.Rinaldi, Andrea C.] Univ Cagliari, Dept Biomed Sci, Cagliari, Italy 10.Univ Ghent, Dept Biol, Res Grp Mycol, Ghent, Belgium 11.Sulistyo, Bobby P.] Indonesia Int Inst Life Sci, Dept Biomed, Jakarta, Indonesia 12.Univ Dschang, Fac Agron & Agr Sci, Dept Plant Protect, Plant Pathol & Agr Zool Res Unit, Dschang, Cameroon 13.Uppsala Univ, Dept Ecol & Genet, Uppsala, Sweden 14.Univ Duisburg Essen, Eukaryot Microbiol, Essen, Germany 15.Botswana Int Univ Sci & Technol, Dept Biol Sci & Biotechnol, Palapye, Botswana 16.Nat Hist Museum Zimbabwe, Bulawayo, Zimbabwe 17.Czech Acad Sci, Inst Bot, Pruhonice, Czech Republic 18.Qujing Normal Univ, Coll Biol Resource & Food Engn, Ctr Yunnan Plateau Biol Resources Protect & Utili, Qujing, Peoples R China 19.Pondicherry Univ, Dept Bot, Jawaharlal Nehru Rajkeeya Mahavidyalaya, Port Blair, India 20.Biersma, Elisabeth Machteld; Newsham, Kevin K.] NERC, British Antarctic Survey, Cambridge, England 21.Univ Copenhagen, Nat Hist Museum Denmark, Copenhagen, Denmark 22.Cameron, Erin K.] St Marys Univ, Dept Environm Sci, Halifax, NS, Canada 23.Davydov, Evgeny A.] Altai State Univ, Barnaul, Russia 24.Albornoz, Felipe E.] CSIRO Land & Water, Wembley, WA, Australia 25.Brearley, Francis Q.] Manchester Metropolitan Univ, Dept Nat Sci, Manchester, Lancs, England 26.Helmholtz Zentrum Munchen, Deutsch Forschungszentrum Gesundheit & Umwelt, Inst Biochem Plant Pathol, Neuherberg, Germany 27.Tasmanian Inst Agr, Hobart, Tas, Australia 28.Utah Valley Univ, Biol Dept, Orem, UT USA 29.Michigan State Univ, Plant Soil & Microbial Sci, E Lansing, MI 48824 USA 30.Barrio, Isabel C.] Agr Univ Iceland, Fac Environm & Forest Sci, Reykjavik, Iceland 31.Univ Copenhagen, GLOBE Inst, Ctr Macroecol Evolut & Climate, Copenhagen, Denmark 32.Lithuanian Res Ctr Agr & Forestry LAMMC, Inst Forestry, Dept Ecol, Kaunas Distr, Lithuania 33.Macia-Vicente, Jose G.] Wageningen Univ & Res, Plant Ecol & Nat Conservat, Wageningen, Netherlands 34.Eszterhazy Karoly Univ, Lendulet Environm Microbiome Res Grp, Eger, Hungary 35.Qatar Univ, Environm Sci Ctr, Doha, Qatar 36.Univ Nacl Autonoma Mexico, Inst Geol, Mexico City, DF, Mexico 37.Mae Fah Luang Univ, Ctr Excellence Fungal Res, Chiang Rai, Thailand 38.Estonian Univ Life Sci, Inst Forestry & Rural Engn, Tartu, Estonia 39.UiT Arctic Univ Norway, Dept Arctic & Marine Biol, Tromso, Norway 40.Univ Parakou, Fac Agron, Res Unit Trop Mycol & Plant Soil Fungi Interact, Parakou, Benin 41.Estonian Univ Life Sci, Chair Hydrobiol & Fishery, Tartu, Estonia 42.Adebola, Lateef A.] Univ Ilorin, Dept Plant Biol, Ilorin, Nigeria 43.Lamit, Louis J.] Syracuse Univ, Dept Biol, Syracuse, NY 13244 USA 44.Lamit, Louis J.] SUNY Coll Environm Sci & Forestry, Dept Environm & Forest Biol, Syracuse, NY 13210 USA 45.Quaid I Azam Univ, Dept Plant Sci, Islamabad, Pakistan 46.da Silva Caceres, Marcela E.] Univ Fed Sergipe, Dept Biociencias, Itabaiana, Sergipe, Brazil 47.Univ Free State, Fac Nat Sci, Dept Genet, Bloemfontein, South Africa 48.Univ Ghent, Dept Environm, Ghent, Belgium 49.LOEWE Ctr Translat Biodivers Genom, Frankfurt, Germany 50.Yorou, Nourou S.] Univ Parakou, Fac Agron, Parakou, Benin 51.Estonian Univ Life Sci, Inst Agr & Environm Sci, Tartu, Estonia 52.Mortimer, Peter E.] Chinese Acad Sci, Kunming Inst Bot, CAS Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China 53.Univ Gothenburg, Gothenburg Global Biodivers Ctr, Dept Biol & Environm Sci, Gothenburg, Sweden 54.Univ Autonoma Coahuila, Inst Ciencias & Humanidades Lic Salvador Gonzalez, Saltillo, Coahuila, Mexico 55.Univ Nacl Autonoma Mexico, Inst Biol, Mexico City, DF, Mexico 56.Univ Austral Chile, Inst Ciencias Ambientales & Evolut, Valdivia, Chile 57.King Saud Univ, Coll Sci, Zool Dept, Riyadh, Saudi Arabia 58.Dudov, Sergey, V; Fedosov, Vladimir E.; Onipchenko, Vladimir G.] Lomonosov Moscow State Univ, Dept Ecol & Plant Geog, Moscow, Russia 59.United Arab Emirates Univ, Coll Sci, Dept Biol, Abu Dhabi, U Arab Emirates 60.Henkel, Terry W.] Humboldt State Univ, Dept Biol Sci, Arcata, CA 95521 USA 61.Fedosov, Vladimir E.] Bot Garden Inst FEB RAS, Vladivostok, Russia 62.Seoul Natl Univ, Sch Biol Sci, Seoul, South Korea 63.Seoul Natl Univ, Inst Microbiol, Seoul, South Korea 64.Goethe Univ Frankfurt Main, Mycol Working Grp, Frankfurt, Germany 65.Latvian State Forest Res Inst Silava, Salaspils, Latvia 66.Univ Tartu, Nat Hist Museum, Tartu, Estonia |
| 推荐引用方式 GB/T 7714 | Tedersoo,Leho,Mikryukov,Vladimir,Anslan,Sten,et al. The Global Soil Mycobiome consortium dataset for boosting fungal diversity research[J]. FUNGAL DIVERSITY,2021,111(1):573-588. |
| APA | Tedersoo,Leho.,Mikryukov,Vladimir.,Anslan,Sten.,Bahram,Mohammad.,Khalid,Abdul Nasir.,...&Abarenkov,Kessy.(2021).The Global Soil Mycobiome consortium dataset for boosting fungal diversity research.FUNGAL DIVERSITY,111(1),573-588. |
| MLA | Tedersoo,Leho,et al."The Global Soil Mycobiome consortium dataset for boosting fungal diversity research".FUNGAL DIVERSITY 111.1(2021):573-588. |
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