KIB OpenIR
The Global Soil Mycobiome consortium dataset for boosting fungal diversity research
Tedersoo,Leho; Mikryukov,Vladimir; Anslan,Sten; Bahram,Mohammad; Khalid,Abdul Nasir; Corrales,Adriana; Agan,Ahto; Vasco-Palacios,Aida-M; Saitta,Alessandro; Antonelli,Alexandre; Rinaldi,Andrea C.; Verbeken,Annemieke; Sulistyo,Bobby P.; Tamgnoue,Boris; Furneaux,Brendan; Ritter,Camila Duarte; Nyamukondiwa,Casper; Sharp,Cathy; Marin,Cesar; Dai,D. Q.; Gohar,Daniyal; Sharmah,Dipon; Biersma,Elisabeth Machteld; Cameron,Erin K.; De Crop,Eske; Otsing,Eveli; Davydov,Evgeny A.; Albornoz,Felipe E.; Brearley,Francis Q.; Buegger,Franz; Gates,Genevieve; Zahn,Geoffrey; Bonito,Gregory; Hiiesalu,Indrek; Hiiesalu,Inga; Zettur,Irma; Barrio,Isabel C.; Parn,Jaan; Heilmann-Clausen,Jacob; Ankuda,Jelena; Kupagme,John Y.; Sarapuu,Joosep; Macia-Vicente,Jose G.; Fovo,Joseph Djeugap; Geml,Jozsef; Alatalo,Juha M.; Alvarez-Manjarrez,Julieta; Monkai,Jutamart; Poldmaa,Kadri; Runnel,Kadri; Adamson,Kalev; Brathen,Kari A.; Pritsch,Karin; Tchan,Kassim,I; Armolaitis,Kestutis; Hyde,Kevin D.; Newsham,Kevin K.; Panksep,Kristel; Adebola,Lateef A.; Lamit,Louis J.; Saba,Malka; da Silva Caceres,Marcela E.; Tuomi,Maria; Gryzenhout,Marieka; Bauters,Marijn; Balint,Miklos; Wijayawardene,Nalin; Hagh-Doust,Niloufar; Yorou,Nourou S.; Kurina,Olavi; Mortimer,Peter E.; Meidl,Peter; Nilsson,R. Henrik; Puusepp,Rasmus; Casique-Valdes,Rebeca; Drenkhan,Rein; Garibay-Orijel,Roberto; Godoy,Roberto; Alfarraj,Saleh; Rahimlou,Saleh; Polme,Sergei; Dudov,Sergey,V; Mundra,Sunil; Ahmed,Talaat; Netherway,Tarquin; Henkel,Terry W.; Roslin,Tomas; Fedosov,Vladimir E.; Onipchenko,Vladimir G.; Yasanthika,W. A. Erandi; Lim,Young Woon; Piepenbring,Meike; Klavina,Darta; Koljalg,Urmas; Abarenkov,Kessy
2021
Source PublicationFUNGAL DIVERSITY
ISSN1560-2745
Volume111Issue:1Pages:573-588
AbstractFungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.
KeywordSoil fungi Global dataset PacBio sequencing Fungal richness IDENTIFICATION
DOI10.1007/s13225-021-00493-7
WOS IDWOS:000723974500001
Citation statistics
Document Type期刊论文
Identifierhttp://ir.kib.ac.cn/handle/151853/73280
Collection中国科学院昆明植物研究所
Affiliation1.Univ Tartu, Mycol & Microbiol Ctr, Tartu, Estonia
2.Inst Ecol & Earth Sci, Tartu, Estonia
3.Swedish Univ Agr Sci, Dept Ecol, Uppsala, Sweden
4.Univ Punjab, Dept Bot, Quaid E Azam Campus, Lahore, Pakistan
5.Univ Rosario, Fac Ciencias Nat, Ctr Invest Microbiol & Biotecnol UR CIMBIUR, Bogota, Colombia
6.Univ Antioquia UdeA, Escuela Microbiol, Grp Microbiol Ambiental & BioMicro, Medellin, Colombia
7.Univ Palermo, Dept Agr Food & Forest Sci, Palermo, Italy
8.Royal Bot Gardens, Surrey, England
9.Rinaldi, Andrea C.] Univ Cagliari, Dept Biomed Sci, Cagliari, Italy
10.Univ Ghent, Dept Biol, Res Grp Mycol, Ghent, Belgium
11.Sulistyo, Bobby P.] Indonesia Int Inst Life Sci, Dept Biomed, Jakarta, Indonesia
12.Univ Dschang, Fac Agron & Agr Sci, Dept Plant Protect, Plant Pathol & Agr Zool Res Unit, Dschang, Cameroon
13.Uppsala Univ, Dept Ecol & Genet, Uppsala, Sweden
14.Univ Duisburg Essen, Eukaryot Microbiol, Essen, Germany
15.Botswana Int Univ Sci & Technol, Dept Biol Sci & Biotechnol, Palapye, Botswana
16.Nat Hist Museum Zimbabwe, Bulawayo, Zimbabwe
17.Czech Acad Sci, Inst Bot, Pruhonice, Czech Republic
18.Qujing Normal Univ, Coll Biol Resource & Food Engn, Ctr Yunnan Plateau Biol Resources Protect & Utili, Qujing, Peoples R China
19.Pondicherry Univ, Dept Bot, Jawaharlal Nehru Rajkeeya Mahavidyalaya, Port Blair, India
20.Biersma, Elisabeth Machteld; Newsham, Kevin K.] NERC, British Antarctic Survey, Cambridge, England
21.Univ Copenhagen, Nat Hist Museum Denmark, Copenhagen, Denmark
22.Cameron, Erin K.] St Marys Univ, Dept Environm Sci, Halifax, NS, Canada
23.Davydov, Evgeny A.] Altai State Univ, Barnaul, Russia
24.Albornoz, Felipe E.] CSIRO Land & Water, Wembley, WA, Australia
25.Brearley, Francis Q.] Manchester Metropolitan Univ, Dept Nat Sci, Manchester, Lancs, England
26.Helmholtz Zentrum Munchen, Deutsch Forschungszentrum Gesundheit & Umwelt, Inst Biochem Plant Pathol, Neuherberg, Germany
27.Tasmanian Inst Agr, Hobart, Tas, Australia
28.Utah Valley Univ, Biol Dept, Orem, UT USA
29.Michigan State Univ, Plant Soil & Microbial Sci, E Lansing, MI 48824 USA
30.Barrio, Isabel C.] Agr Univ Iceland, Fac Environm & Forest Sci, Reykjavik, Iceland
31.Univ Copenhagen, GLOBE Inst, Ctr Macroecol Evolut & Climate, Copenhagen, Denmark
32.Lithuanian Res Ctr Agr & Forestry LAMMC, Inst Forestry, Dept Ecol, Kaunas Distr, Lithuania
33.Macia-Vicente, Jose G.] Wageningen Univ & Res, Plant Ecol & Nat Conservat, Wageningen, Netherlands
34.Eszterhazy Karoly Univ, Lendulet Environm Microbiome Res Grp, Eger, Hungary
35.Qatar Univ, Environm Sci Ctr, Doha, Qatar
36.Univ Nacl Autonoma Mexico, Inst Geol, Mexico City, DF, Mexico
37.Mae Fah Luang Univ, Ctr Excellence Fungal Res, Chiang Rai, Thailand
38.Estonian Univ Life Sci, Inst Forestry & Rural Engn, Tartu, Estonia
39.UiT Arctic Univ Norway, Dept Arctic & Marine Biol, Tromso, Norway
40.Univ Parakou, Fac Agron, Res Unit Trop Mycol & Plant Soil Fungi Interact, Parakou, Benin
41.Estonian Univ Life Sci, Chair Hydrobiol & Fishery, Tartu, Estonia
42.Adebola, Lateef A.] Univ Ilorin, Dept Plant Biol, Ilorin, Nigeria
43.Lamit, Louis J.] Syracuse Univ, Dept Biol, Syracuse, NY 13244 USA
44.Lamit, Louis J.] SUNY Coll Environm Sci & Forestry, Dept Environm & Forest Biol, Syracuse, NY 13210 USA
45.Quaid I Azam Univ, Dept Plant Sci, Islamabad, Pakistan
46.da Silva Caceres, Marcela E.] Univ Fed Sergipe, Dept Biociencias, Itabaiana, Sergipe, Brazil
47.Univ Free State, Fac Nat Sci, Dept Genet, Bloemfontein, South Africa
48.Univ Ghent, Dept Environm, Ghent, Belgium
49.LOEWE Ctr Translat Biodivers Genom, Frankfurt, Germany
50.Yorou, Nourou S.] Univ Parakou, Fac Agron, Parakou, Benin
51.Estonian Univ Life Sci, Inst Agr & Environm Sci, Tartu, Estonia
52.Mortimer, Peter E.] Chinese Acad Sci, Kunming Inst Bot, CAS Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China
53.Univ Gothenburg, Gothenburg Global Biodivers Ctr, Dept Biol & Environm Sci, Gothenburg, Sweden
54.Univ Autonoma Coahuila, Inst Ciencias & Humanidades Lic Salvador Gonzalez, Saltillo, Coahuila, Mexico
55.Univ Nacl Autonoma Mexico, Inst Biol, Mexico City, DF, Mexico
56.Univ Austral Chile, Inst Ciencias Ambientales & Evolut, Valdivia, Chile
57.King Saud Univ, Coll Sci, Zool Dept, Riyadh, Saudi Arabia
58.Dudov, Sergey, V; Fedosov, Vladimir E.; Onipchenko, Vladimir G.] Lomonosov Moscow State Univ, Dept Ecol & Plant Geog, Moscow, Russia
59.United Arab Emirates Univ, Coll Sci, Dept Biol, Abu Dhabi, U Arab Emirates
60.Henkel, Terry W.] Humboldt State Univ, Dept Biol Sci, Arcata, CA 95521 USA
61.Fedosov, Vladimir E.] Bot Garden Inst FEB RAS, Vladivostok, Russia
62.Seoul Natl Univ, Sch Biol Sci, Seoul, South Korea
63.Seoul Natl Univ, Inst Microbiol, Seoul, South Korea
64.Goethe Univ Frankfurt Main, Mycol Working Grp, Frankfurt, Germany
65.Latvian State Forest Res Inst Silava, Salaspils, Latvia
66.Univ Tartu, Nat Hist Museum, Tartu, Estonia
Recommended Citation
GB/T 7714
Tedersoo,Leho,Mikryukov,Vladimir,Anslan,Sten,et al. The Global Soil Mycobiome consortium dataset for boosting fungal diversity research[J]. FUNGAL DIVERSITY,2021,111(1):573-588.
APA Tedersoo,Leho.,Mikryukov,Vladimir.,Anslan,Sten.,Bahram,Mohammad.,Khalid,Abdul Nasir.,...&Abarenkov,Kessy.(2021).The Global Soil Mycobiome consortium dataset for boosting fungal diversity research.FUNGAL DIVERSITY,111(1),573-588.
MLA Tedersoo,Leho,et al."The Global Soil Mycobiome consortium dataset for boosting fungal diversity research".FUNGAL DIVERSITY 111.1(2021):573-588.
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