Genome surveying reveals the complete chloroplast genome and nuclear genomic features of the crocin-producing plant Gardenia jasminoides Ellis

doi:10.1007/s10722-020-01056-6

KIB OpenIR

	Genome surveying reveals the complete chloroplast genome and nuclear genomic features of the crocin-producing plant Gardenia jasminoides Ellis
	Wang,Wencai ; Shao,Fengqing ; Deng,Xin ; Liu,Yuanwei ; Chen,Siyun ; Li,Yongquan ; Guo,Wei ; Jiang,Qingbin ; Liang,Hong ; Zhang,Xianzhi
	2021
发表期刊	GENETIC RESOURCES AND CROP EVOLUTION
ISSN	0925-9864
卷号	68 期号:3 页码:1165-1180
摘要	Gardenia jasminoides, a well-known traditional Chinese herb, has been extensively utilized for its being as stable pigment in food industry and as rich source of crocin in treatment of various cancers and cardiovascular disease. Nevertheless, molecular data shortage of the organelle and nuclear genome vastly limits further biological research on G. jasminoides. In this study, complete chloroplast (cp) genome and large-scale nuclear genome sequences of G. jasminoides were initially generated by genome survey sequencing, and comprehensive genomic structure and comparison analyses were performed. The results showed that G. jasminoides cp genome displayed a typical quadripartite organization and was sized in 154,921 bp with 37.5% GC content. It contained 132 genes, 18 out of which were duplicated in the inverted repeat regions (IRs). Fifty long repeats (motif > 10 bp) and 27 simple sequence repeats were detected, and 30 usage-biased codons and 58 RNA-editing sites were predicted in G. jasminoides cp genome. The G. jasminoides cp genome was similar to those related species in Rubiaceae in terms of gene order and IR borders and a sister relationship of Gardenia and Coffea is strongly supported. Furthermore, the nuclear genome size of G. jasminoides was estimated to be 562.9 Mb, with heterozygosity rate being of 0.68%, repeat proportion of 51.6% and GC content of 36.44%. Overall, the data resources and findings generated in the present study will shed new light on the molecular and breeding studies on this important crocin-producing plant in the future.
关键词	Gardenia jasminoides Genome surveying Chloroplast genome Nuclear genomic features Crocin-producing plant RNA SEQUENCE CLEAVAGE MITOCHONDRIAL CONSTITUENTS ORGANIZATION ANNOTATION RUBIACEAE REPEAT ORIGIN
DOI	10.1007/s10722-020-01056-6
WOS记录号	WOS:000587655800002
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/73050
专题	中国科学院昆明植物研究所
作者单位	1.Guangzhou Univ Chinese Med, Sci & Technol Innovat Ctr, Guangzhou 510405, Peoples R China 2.Guangzhou Univ Chinese Med, Inst Clin Pharmacol, Guangzhou 510405, Peoples R China 3.Zhongkai Univ Agr & Engn, Coll Hort & Landscape Architecture, Guangzhou 510225, Peoples R China 4.Hubei Zixin Biotechnol Co LTD, Huangshi 435004, Hubei, Peoples R China 5.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China 6.Chinese Acad Forestry, Res Inst Trop Forestry, Guangzhou 510520, Peoples R China
推荐引用方式 GB/T 7714	Wang,Wencai,Shao,Fengqing,Deng,Xin,et al. Genome surveying reveals the complete chloroplast genome and nuclear genomic features of the crocin-producing plant Gardenia jasminoides Ellis[J]. GENETIC RESOURCES AND CROP EVOLUTION,2021,68(3):1165-1180.
APA	Wang,Wencai.,Shao,Fengqing.,Deng,Xin.,Liu,Yuanwei.,Chen,Siyun.,...&Zhang,Xianzhi.(2021).Genome surveying reveals the complete chloroplast genome and nuclear genomic features of the crocin-producing plant Gardenia jasminoides Ellis.GENETIC RESOURCES AND CROP EVOLUTION,68(3),1165-1180.
MLA	Wang,Wencai,et al."Genome surveying reveals the complete chloroplast genome and nuclear genomic features of the crocin-producing plant Gardenia jasminoides Ellis".GENETIC RESOURCES AND CROP EVOLUTION 68.3(2021):1165-1180.