Comparative expression analysis of heavy metal ATPase subfamily genes between Cd-tolerant and Cd-sensitive turnip landraces

doi:10.1016/j.pld.2019.02.001

	Comparative expression analysis of heavy metal ATPase subfamily genes between Cd-tolerant and Cd-sensitive turnip landraces
	Wu, Yuansheng 1,2; Li, Xiong1,3 ; Chen, Di 1,4; Han, Xi 2; Li, Boqun 1,3; Yang, Yonghong 2; Yang, Yongping1,3
通讯作者	Yang, Yongping(yangyp@mail.kib.ac.cn)
	2019-08-01
发表期刊	PLANT DIVERSITY
ISSN	2096-2703
卷号	41 期号:4 页码:275-283
摘要	The heavy metal ATPase (HMA) subfamily is mainly involved in heavy metal (HM) tolerance and transport in plants, but an understanding of the definite roles and mechanisms of most HMA members are still limited. In the present study, we identified 14 candidate HMA genes named BrrHMA1-BrrHMA8 from the turnip genome and analyzed the phylogeny, gene structure, chromosome distribution, and conserved domains and motifs of HMAs in turnip (Brassica rapa var. rapa). According to our phylogenetic tree, the BrrHMAs are divided into a Zn/Cd/Co/Pb subclass and Cu/Ag subclass. The BrrHMA members show similar structural characteristics within subclasses. To explore the roles of BrrHMAs in turnip, we compared the gene sequences and expression patterns of the BrrHMA genes between a Cd-tolerant landrace and a Cd-sensitive landrace. Most BrrHMA genes showed similar spatial expression patterns in both Cd-tolerant and Cd-sensitive turnip landraces; some BrrHMA genes, however, were differentially expressed in specific tissue in Cd-tolerant and Cd-sensitive turnip. Specifically, BrrHMA genes in the Zn/Cd/Co/Pb subclass shared the same coding sequence but were differentially expressed in Cd-tolerant and Cd-sensitive turnip landraces under Cd stress. Our findings suggest that the stable expression and up-regulated expression of BrrHMA Zn/Cd/Co/Pb subclass genes under Cd stress may contribute to the higher Cd tolerance of turnip landraces. Copyright (C) 2019 Kunming Institute of Botany, Chinese Academy of Sciences. Publishing services by Elsevier B.V.
关键词	Heavy metal ATPase Cadmium Turnip Transmembrane helix Differential gene expression
DOI	10.1016/j.pld.2019.02.001
收录类别	SCI
语种	英语
WOS记录号	WOS:000484805800008
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/68699
专题	中国西南野生生物种质资源库
通讯作者	Yang, Yongping
作者单位	1.Chinese Acad Sci, Kunming Inst Bot, China Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China 2.Yunnan Agr Univ, Coll Plant Protect, Kunming 650201, Yunnan, Peoples R China 3.Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming 650201, Yunnan, Peoples R China 4.Yunnan Univ, Sch Life Sci, Kunming 650091, Yunnan, Peoples R China
推荐引用方式 GB/T 7714	Wu, Yuansheng,Li, Xiong,Chen, Di,et al. Comparative expression analysis of heavy metal ATPase subfamily genes between Cd-tolerant and Cd-sensitive turnip landraces[J]. PLANT DIVERSITY,2019,41(4):275-283.
APA	Wu, Yuansheng.,Li, Xiong.,Chen, Di.,Han, Xi.,Li, Boqun.,...&Yang, Yongping.(2019).Comparative expression analysis of heavy metal ATPase subfamily genes between Cd-tolerant and Cd-sensitive turnip landraces.PLANT DIVERSITY,41(4),275-283.
MLA	Wu, Yuansheng,et al."Comparative expression analysis of heavy metal ATPase subfamily genes between Cd-tolerant and Cd-sensitive turnip landraces".PLANT DIVERSITY 41.4(2019):275-283.

条目包含的文件		下载所有文件
文件名称/大小	文献类型	版本类型	开放类型	使用许可
Wu-2019-Comparative （1519KB）	期刊论文	出版稿	开放获取	CC BY-NC-SA	浏览下载