The complete plastome of Panax stipuleanatus: Comparative and phylogenetic analyses of the genus Panax (Araliaceae).

KIB OpenIR

	The complete plastome of Panax stipuleanatus: Comparative and phylogenetic analyses of the genus Panax (Araliaceae).
	Liu, Changkun; Yang, Zhenyan; Yang, Lifang; Yang, Junbo; Ji, Yunheng
	2018
发表期刊	Plant diversity
ISSN	2468-2659
卷号	40 期号:6 页码:265-276
摘要	Panax stipuleanatus (Araliaceae) is an endangered and medicinally important plant endemic to China. However, phylogenetic relationships within the genus Panax have remained unclear. In this study, we sequenced the complete plastome of P.stipuleanatus and included previously reported Panax plastomes to better understand the relationships between species and plastome evolution within the genus Panax. The plastome of P.stipuleanatus is 156,069 base pairs (bp) in length, consisting of a pair of inverted repeats (IRs, each 25,887bp) that divide the plastome into a large single copy region (LSC, 86,126bp) and a small single copy region (SSC, 8169bp). The plastome contains 114 unigenes (80 protein-coding genes, 30 tRNA genes, and 4 rRNA genes). Comparative analyses indicated that the plastome gene content and order, as well as the expansion/contraction of the IR regions, are all highly conserved within Panax. No significant positive selection in the plastid protein-coding genes was observed across the eight Panax species, suggesting the Panax plastomes may have undergone a strong purifying selection. Our phylogenomic analyses resulted in a phylogeny with high resolution and supports for Panax. Nine protein-coding genes and 10 non-coding regions presented high sequence divergence, which could be useful for identifying different Panax species.
语种	英语
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/64775
专题	中国科学院昆明植物研究所
推荐引用方式 GB/T 7714	Liu, Changkun,Yang, Zhenyan,Yang, Lifang,et al. The complete plastome of Panax stipuleanatus: Comparative and phylogenetic analyses of the genus Panax (Araliaceae).[J]. Plant diversity,2018,40(6):265-276.
APA	Liu, Changkun,Yang, Zhenyan,Yang, Lifang,Yang, Junbo,&Ji, Yunheng.(2018).The complete plastome of Panax stipuleanatus: Comparative and phylogenetic analyses of the genus Panax (Araliaceae)..Plant diversity,40(6),265-276.
MLA	Liu, Changkun,et al."The complete plastome of Panax stipuleanatus: Comparative and phylogenetic analyses of the genus Panax (Araliaceae).".Plant diversity 40.6(2018):265-276.