Phylogeny and evolutionary history of Pinaceae updated by transcriptomic analysis

doi:10.1016/j.ympev.2018.08.011

	Phylogeny and evolutionary history of Pinaceae updated by transcriptomic analysis
	Ran, Jin-Hua 1; Shen, Ting-Ting 1,3; Wu, Hui 1; Gong, Xun2 ; Wang, Xiao-Quan 1,3
	2018-12-01
发表期刊	MOLECULAR PHYLOGENETICS AND EVOLUTION
ISSN	1055-7903
卷号	129 页码:106-116
摘要	Pinaceae comprises 11 genera, and represents the largest family of conifers with an extensive wild distribution in the Northern Hemisphere. Intergeneric relationships of Pinaceae have been investigated using many morphological characters and molecular markers, but phylogenetic positions of four genera, including Cathaya, Cedrus, Nothotsuga and Pseudolarix, remain controversial or have not been completely resolved. To completely resolve the intergeneric relationships of Pinaceae, we conducted a comparative transcriptomic study of 14 species representing all Pinaceae genera. Multiple data sets, containing up to 6,369,681 sites across 4676 loci, were analyzed using concatenation and coalescent methods. Our study generated a robust topology, which divides Pinaceae into two clades, one (pinoid) including Cathaya, Laric, Picea, Pinus, and Pseudotsuga, and the other (abietoid) including Abies, Cedrus, Keteleeria, Nothotsuga, Pseudolarix, and Tsuga. Cathaya and Pinus form a Glade sister to Picea; Cedrus is sister to the remaining abietoid genera, and the two genera Nothotsuga and Tsuga form a Glade sister to Pseudolarix. The discordant positions of Cathaya, Cedrus and Pseudolarix in different gene trees could be explained by ancient radiation and/or molecular homoplastic evolution. The hybrid origin hypothesis of Nothotsuga is not supported. Based on molecular dating, extant Pinaceae genera diverged since about 206 Mya, earlier than the break-up of Pangea, and the divergence among the pinoid genera occurred earlier than the split among the abietoid genera. Moreover, our study indicates that two radiation events occurred in the evolution of Pinaceae genera, and some important morphological characters evolved multiple times based on ancestral state reconstruction.
关键词	Phylogenomics Divergence times Convergence Cathaya Cedrus Pinaceae
DOI	10.1016/j.ympev.2018.08.011
语种	英语
WOS记录号	WOS:000446023100010
引用统计
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/62786
专题	中国科学院东亚植物多样性与生物地理学重点实验室
通讯作者	Ran, Jin-Hua; Wang, Xiao-Quan
作者单位	1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, 20 Nanxincun, Beijing 100093, Peoples R China 2.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming 650204, Yunnan, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
推荐引用方式 GB/T 7714	Ran, Jin-Hua,Shen, Ting-Ting,Wu, Hui,et al. Phylogeny and evolutionary history of Pinaceae updated by transcriptomic analysis[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2018,129:106-116.
APA	Ran, Jin-Hua,Shen, Ting-Ting,Wu, Hui,Gong, Xun,&Wang, Xiao-Quan.(2018).Phylogeny and evolutionary history of Pinaceae updated by transcriptomic analysis.MOLECULAR PHYLOGENETICS AND EVOLUTION,129,106-116.
MLA	Ran, Jin-Hua,et al."Phylogeny and evolutionary history of Pinaceae updated by transcriptomic analysis".MOLECULAR PHYLOGENETICS AND EVOLUTION 129(2018):106-116.