Integrating fossils in a molecular-based phylogeny and testing them as calibration points for divergence time estimates in Menispermaceae
Jacques, Frederic M. B.1,2; Wang, Wei1; Ortiz, Rosa Del C.3; Li, Hong-Lei1,4; Zhou, Zhe-Kun2,5; Chen, Zhi-Duan1
Corresponding Authorfrederic.jacques@nigpas.ac.cn ; wangwei1127@ibcas.ac.cn ; rosa.ortiz-gentry@mobot.org ; zhiduan@ibcas.ac.cn
2011
Source PublicationJOURNAL OF SYSTEMATICS AND EVOLUTION
ISSN1674-4918
Volume49Issue:1Pages:25-49
Abstract

The phylogeny of extant Menispermaceae (Ranunculales) is reconstructed based on DNA sequences of two chloroplast genes (rbcL and atpB) from 94 species belonging to 56 genera. Fossilized endocarps represent 34 genera. The positions of these are inferred using 30 morphological characters and the molecular phylogeny as a backbone constraint. Nine of the thirteen nodes that are each dated by a fossil are used as calibration points for the estimates of molecular divergence times. BEAST is used to estimate stem age (121.2 Myr) and crown age (105.4 Myr) for Menispermaceae. This method does not require an input tree topology and can also account for rate heterogeneity among lineages. The sensitivity of these estimates to fossil constraints is then evaluated by a cross-validation procedure. The estimated origin for Menispermaceae is dated to the mid-Jurassic if the customary maximum age of 125 Myr for eudicots is not implemented. All constraints when used alone failed to estimate node ages in some parts of the tree. Fossils from the Palaeocene and Eocene impose strict constraints. Likewise, the use of Prototinomiscium as a dating constraint for Menispermaceae appears to be a conservative approach.

KeywordAge Calibration Cross-validation Fossil Menispermaceae Molecular Scaffold Phylogeny
Subject AreaPlant Sciences
DOI10.1111/j.1759-6831.2010.00105.x
Indexed BySCI
Language英语
WOS IDWOS:000287469100003
Citation statistics
Document Type期刊论文
Identifierhttp://ir.kib.ac.cn/handle/151853/3992
Collection中国科学院东亚植物多样性与生物地理学重点实验室
Affiliation1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China
2.Chinese Acad Sci, Kunming Inst Bot, Dept Biodivers & Biogeog, Kunming 650204, Peoples R China
3.Missouri Bot Garden, St Louis, MO 63166 USA
4.Chinese Acad Sci, Grad Sch, Beijing 100049, Peoples R China
5.Chinese Acad Sci, Xishuangbanna Trop Bot Garden, Mengla 666303, Peoples R China
Recommended Citation
GB/T 7714
Jacques, Frederic M. B.,Wang, Wei,Ortiz, Rosa Del C.,et al. Integrating fossils in a molecular-based phylogeny and testing them as calibration points for divergence time estimates in Menispermaceae[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2011,49(1):25-49.
APA Jacques, Frederic M. B.,Wang, Wei,Ortiz, Rosa Del C.,Li, Hong-Lei,Zhou, Zhe-Kun,&Chen, Zhi-Duan.(2011).Integrating fossils in a molecular-based phylogeny and testing them as calibration points for divergence time estimates in Menispermaceae.JOURNAL OF SYSTEMATICS AND EVOLUTION,49(1),25-49.
MLA Jacques, Frederic M. B.,et al."Integrating fossils in a molecular-based phylogeny and testing them as calibration points for divergence time estimates in Menispermaceae".JOURNAL OF SYSTEMATICS AND EVOLUTION 49.1(2011):25-49.
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