Genetic Diversity and Population Structure: Implications for Conservation of Wild Soybean (Glycine soja Sieb. et Zucc) Based on Nuclear and Chloroplast Microsatellite Variation

doi:10.3390/ijms131012608

	Genetic Diversity and Population Structure: Implications for Conservation of Wild Soybean (Glycine soja Sieb. et Zucc) Based on Nuclear and Chloroplast Microsatellite Variation
	He, Shuilian 1,2; Wang, Yunsheng 1,3; Volis, Sergei 4; Li, Dezhu1 ; Yi, Tingshuang1
通讯作者	Li, DZ (reprint author), Chinese Acad Sci, Key Lab Biodivers & Biogeog, Kunming Inst Bot, China SW Germplasm Bank Wild Species, Kunming 650201, Peoples R China.,heshuilian@mail.kib.ac.cn ; wys3269@126.com ; svolis@gmail.com ; DZL@mail.kib.ac.cn ; tingshuangyi@mail.kib.ac.cn
	2012-10-01
发表期刊	INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
ISSN	1422-0067
卷号	13 期号:10 页码:12608-12628
摘要	Wild soybean (Glycine soja Sieb. et Zucc) is the most important germplasm resource for soybean breeding, and is currently subject to habitat loss, fragmentation and population decline. In order to develop successful conservation strategies, a total of 604 wild soybean accessions from 43 locations sampled across its range in China, Japan and Korea were analyzed using 20 nuclear (nSSRs) and five chloroplast microsatellite markers (cpSSRs) to reveal its genetic diversity and population structure. Relatively high nSSR diversity was found in wild soybean compared with other self-pollinated species, and the region of middle and lower reaches of Yangtze River (MDRY) was revealed to have the highest genetic diversity. However, cpSSRs suggested that Korea is a center of diversity. High genetic differentiation and low gene flow among populations were detected, which is consistent with the predominant self-pollination of wild soybean. Two main clusters were revealed by MCMC structure reconstruction and phylogenetic dendrogram, one formed by a group of populations from northwestern China (NWC) and north China (NC), and the other including northeastern China (NEC), Japan, Korea, MDRY, south China (SC) and southwestern China (SWC). Contrib analyses showed that southwestern China makes the greatest contribution to the total diversity and allelic richness, and is worthy of being given conservation priority.
关键词	Glycine Soja Microsatellite Genetic Diversity Genetic Structure Bottleneck Effect
学科领域	Chemistry ; Multidisciplinary
DOI	10.3390/ijms131012608
收录类别	SCI
语种	英语
WOS记录号	WOS:000310677800029
引用统计	被引频次：61[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.kib.ac.cn/handle/151853/16008
专题	中国西南野生生物种质资源库
作者单位	1.Chinese Acad Sci, Key Lab Biodivers & Biogeog, Kunming Inst Bot, China SW Germplasm Bank Wild Species, Kunming 650201, Peoples R China 2.Beijing Univ, Chinese Acad Sci, Beijing 100049, Peoples R China 3.S China Agr Univ, Coll Hort, Guangzhou 510642, Guangdong, Peoples R China 4.Chinese Acad Sci, Key Lab Biodivers & Biogeog, Kunming Inst Bot, Kunming 650201, Peoples R China
推荐引用方式 GB/T 7714	He, Shuilian,Wang, Yunsheng,Volis, Sergei,et al. Genetic Diversity and Population Structure: Implications for Conservation of Wild Soybean (Glycine soja Sieb. et Zucc) Based on Nuclear and Chloroplast Microsatellite Variation[J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,2012,13(10):12608-12628.
APA	He, Shuilian,Wang, Yunsheng,Volis, Sergei,Li, Dezhu,&Yi, Tingshuang.(2012).Genetic Diversity and Population Structure: Implications for Conservation of Wild Soybean (Glycine soja Sieb. et Zucc) Based on Nuclear and Chloroplast Microsatellite Variation.INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,13(10),12608-12628.
MLA	He, Shuilian,et al."Genetic Diversity and Population Structure: Implications for Conservation of Wild Soybean (Glycine soja Sieb. et Zucc) Based on Nuclear and Chloroplast Microsatellite Variation".INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 13.10(2012):12608-12628.

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